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Best Boutique Hotels in Shinjuku

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Check availability on Shinjuku Boutique Hotels

Next weekend
6 Nov - 8 Nov
In two weeks
13 Nov - 15 Nov

Our top choices for Shinjuku boutique hotels

A building with a large, lifelike dinosaur sculpture on the facade.

1. Hotel Gracery Shinjuku

Hotel Gracery Shinjuku
4.0 star property
Shinjuku
9.0 out of 10, Wonderful, (5,578 reviews)
"Awesome place, would stay again"
United States
matthew
The price is RM711
RM861 total
30 Nov - 1 Dec
Hotel Gracery Shinjuku
A hotel room with two beds, a sofa, and a desk.

2. Tokyo Bay Shiomi Prince Hotel

Tokyo Bay Shiomi Prince Hotel
4.0 star property
10.9 km from Shinjuku
9.6 out of 10, Exceptional, (6,237 reviews)
"Great rooms and amenities."
Canada
Olga
The price is RM636
RM791 total
30 Nov - 1 Dec
Tokyo Bay Shiomi Prince Hotel
An outdoor patio area with a table and chairs, surrounded by greenery and buildings.

3. THE KNOT TOKYO Shinjuku

THE KNOT TOKYO Shinjuku
3.5 star property
Shinjuku
9.0 out of 10, Wonderful, (2,442 reviews)
"It was a great stay!"
United States
Robert
The price is RM554
RM610 total
30 Nov - 1 Dec
THE KNOT TOKYO Shinjuku
A spacious lobby with modern pendant lighting, wooden reception desk, and large windows offering a view of the outdoors.

4. Shinjuku Washington Hotel Main

Shinjuku Washington Hotel Main
4.0 star property
Shinjuku
8.2 out of 10, Very good, (4,354 reviews)
"Nice stay"
United States
Phyo Su
The price is RM400
RM484 total
1 Dec - 2 Dec
Shinjuku Washington Hotel Main
A modern hotel room with a marble bathroom, a glass coffee table, and a city view.

5. Shinjuku Granbell Hotel

Shinjuku Granbell Hotel
4.0 star property
Shinjuku
8.8 out of 10, Excellent, (2,511 reviews)
"We had a great time here!! Really spacious room and delicious breakfast!!"
Australia
Maddy
The price is RM475
RM523 total
30 Nov - 1 Dec
Shinjuku Granbell Hotel
A hotel with a modern design, surrounded by urban buildings and cherry blossoms.

6. Hotel Metropolitan Edmont Tokyo

Hotel Metropolitan Edmont Tokyo
4.0 star property
4.2 km from Shinjuku
9.6 out of 10, Exceptional, (4,183 reviews)
"It was a great hotel in a great location and the staff was incredible!"
United States
Evgenii
The price is RM543
RM675 total
23 Nov - 24 Nov
Hotel Metropolitan Edmont Tokyo
Two tall, white skyscrapers with a grid-like facade, surrounded by trees and a clear blue sky.

7. Keio Plaza Hotel Tokyo

Keio Plaza Hotel Tokyo
4.5 star property
Shinjuku
9.2 out of 10, Wonderful, (3,319 reviews)
"Excellent hotel, 100% recommended!"
Spain
Angela
The price is RM917
RM1,160 total
1 Dec - 2 Dec
Keio Plaza Hotel Tokyo
A high-rise room with a panoramic view of a city skyline and a prominent tower.

8. The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection

The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection
5.0 star property
Minato, 5.8 km from Shinjuku
9.2 out of 10, Wonderful, (3,023 reviews)
"Great hotel!"
Canada
Aneep
The price is RM966
RM1,229 total
1 Dec - 2 Dec
The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection
A wall composed of multiple circular frames with various photographs and text, likely representing different locations or memories.

9. HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel

HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel
4.0 star property
Shinjuku
9.6 out of 10, Exceptional, (2,054 reviews)
"Wonderful hotel in a great neighborhood."
United States
Kirsten
The price is RM1,468
RM1,824 total
1 Nov - 2 Nov
HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel
A modern hotel with outdoor seating and a well-maintained lawn.

10. Mitsui Garden Hotel Jingugaien Tokyo Premier

Mitsui Garden Hotel Jingugaien Tokyo Premier
4.5 star property
Shinjuku
9.4 out of 10, Exceptional, (1,874 reviews)
"Great hotel, i really loved it"
United States
Adonis
The price is RM736
RM809 total
30 Nov - 1 Dec
Mitsui Garden Hotel Jingugaien Tokyo Premier
A tall building with a PePe sign, surrounded by other buildings and a clear sky.

11. Shinjuku Prince Hotel

Shinjuku Prince Hotel
4.0 star property
Shinjuku
9.0 out of 10, Wonderful, (1,874 reviews)
"Great location, clean room and breakfast was good value for money"
Australia
Megan
The price is RM766
RM952 total
1 Dec - 2 Dec
Shinjuku Prince Hotel
A modern hotel lobby with a marble reception desk, seating area, and a curved ceiling design.

12. Shinjuku Washington Hotel Annex

Shinjuku Washington Hotel Annex
4.0 star property
Shinjuku
8.6 out of 10, Excellent, (1,091 reviews)
"Great location for attractions and the breakfast was very good a d convenient."
Canada
Dave
The price is RM463
RM560 total
30 Nov - 1 Dec
Shinjuku Washington Hotel Annex
A modern hotel with a prominent entrance, multiple floors, and a parking sign nearby.

13. Apa Hotel Higashi Shinjuku Kabukicho Tower

Apa Hotel Higashi Shinjuku Kabukicho Tower
3.0 star property
Shinjuku
9.0 out of 10, Wonderful, (2,503 reviews)
"I would stay here again! Very convenient to everything and the food around here were delicious!"
United States
Athit
The price is RM410
RM496 total
29 Nov - 30 Nov
Apa Hotel Higashi Shinjuku Kabukicho Tower
A spacious lobby with a central seating area, large chandeliers, and a high ceiling.

14. Hyatt Regency Tokyo

Hyatt Regency Tokyo
4.5 star property
Shinjuku
9.2 out of 10, Wonderful, (1,003 reviews)
"Amazing property, well located with a wonderful team"
United States
Asher
The price is RM1,391
RM1,759 total
1 Dec - 2 Dec
Hyatt Regency Tokyo
A tall hotel with a modern design, featuring a prominent entrance and a sign for the "APART HOTEL."

15. APA Hotel & Resort Ryogoku Ekimae Tower

APA Hotel & Resort Ryogoku Ekimae Tower
3.0 star property
8.2 km from Shinjuku
9.0 out of 10, Wonderful, (6,900 reviews)
"Great location and overall enjoyable."
United States
Insiya
The price is RM230
RM278 total
3 Nov - 4 Nov
APA Hotel & Resort Ryogoku Ekimae Tower
A traditional Japanese building with a wooden roof and a blue entrance gate, surrounded by greenery and adjacent to modern high-rise buildings.

16. Onsen Ryokan Yuen Shinjuku

Onsen Ryokan Yuen Shinjuku
3.5 star property
Shinjuku
9.2 out of 10, Wonderful, (1,004 reviews)
"Excellent stay"
United States
Kedrick
The price is RM919
RM1,018 total
30 Nov - 1 Dec
Onsen Ryokan Yuen Shinjuku
A high-rise hotel with a curved facade and multiple floors.

17. Hotel Sunroute Plaza Shinjuku

Hotel Sunroute Plaza Shinjuku
3.5 star property
0.9 km from Shinjuku
9.0 out of 10, Wonderful, (2,320 reviews)
"Breakfast is awesome and hotel amenities too, very central location close to all train station."
Canada
Jo ann
The price is RM805
RM885 total
30 Nov - 1 Dec
Hotel Sunroute Plaza Shinjuku
A modern lobby with a reception desk, seating area, and a large wall with a geometric pattern.

18. SOTETSU GRAND FRESA TAKADANOBABA

SOTETSU GRAND FRESA TAKADANOBABA
3.5 star property
Shinjuku
9.4 out of 10, Exceptional, (1,264 reviews)
"very good location and delicious breakfast!"
United States
You Sun
The price is RM363
RM400 total
1 Nov - 2 Nov
SOTETSU GRAND FRESA TAKADANOBABA
A high-rise hotel with a grid-like facade, surrounded by a dense urban environment with various other buildings and a mountain in the background.

19. Shinagawa Prince Hotel

Shinagawa Prince Hotel
4.0 star property
7.9 km from Shinjuku
8.4 out of 10, Very good, (5,194 reviews)
"Our stay was perfect. Wonderful hotel."
United States
Kela
The price is RM418
RM520 total
3 Nov - 4 Nov
Shinagawa Prince Hotel
A tall, modern hotel with a glass facade and a prominent Ferris wheel in the background.

20. Tokyo Dome Hotel

Tokyo Dome Hotel
4.0 star property
4.6 km from Shinjuku
9.2 out of 10, Wonderful, (2,416 reviews)
"I recommend the hotel very well located, close to many activities"
United States
Ramon
The price is RM642
RM777 total
1 Nov - 2 Nov
Tokyo Dome Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shinjuku Hotel Reviews

Shinjuku Granbell Hotel

Shinjuku Granbell Hotel

8/10 Good
"Clean room. The staff was very helpful and friendly."
Beatriz 4-night trip
Posted 20 hours ago
Shinjuku Granbell Hotel
Hotel Rose Garden Shinjuku

Hotel Rose Garden Shinjuku

10/10 Excellent
"Lovely stay, fantastic staff. The rooms could use updating"
Daniel 1-night trip
Posted 2 days ago
Hotel Rose Garden Shinjuku

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea® and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.

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