Best Boutique Hotels in San Diego
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on San Diego Boutique Hotels
Our top choices for San Diego boutique hotels
9.4 out of 10, Exceptional, (55 reviews)
"Great experience
Awesome hotel to stay
Clean and comfortable beds
Love the bath
I would 100% recommend this hotel
Thank you
I will eventually return"
Javie Alejandro
The price is RM259
RM615 total
includes taxes & fees
9 Jul - 10 Jul
Hotel Indigo San Diego-Gaslamp Quarter by IHG
Hotel Indigo San Diego-Gaslamp Quarter by IHGDowntown San Diego
8.8 out of 10, Excellent, (1,008 reviews)
"Favorite place to stay in San Diego"
Jonathan
The price is RM690
RM980 total
includes taxes & fees
4 Aug - 5 Aug
8.8 out of 10, Excellent, (1,474 reviews)
"Great hotel for the value."
Christian Benedict F.
The price is RM445
RM491 total
includes taxes & fees
2 Aug - 3 Aug
Alma San Diego Downtown, a Tribute Portfolio Hotel
Alma San Diego Downtown, a Tribute Portfolio HotelDowntown San Diego
9.0 out of 10, Wonderful, (1,019 reviews)
"Clean room, great location. I would recommend this hotel"
Ralph
The price is RM580
RM837 total
includes taxes & fees
2 Aug - 3 Aug
8.6 out of 10, Excellent, (1,574 reviews)
"Centrally located, great staff, spacious rooms."
Adrian
The price is RM680
RM789 total
includes taxes & fees
8 Jul - 9 Jul
8.8 out of 10, Excellent, (1,003 reviews)
"Great style, clean place, and great location."
Stephen
The price is RM713
RM806 total
includes taxes & fees
2 Aug - 3 Aug
Hotel Republic San Diego, Autograph Collection
Hotel Republic San Diego, Autograph CollectionDowntown San Diego
9.0 out of 10, Wonderful, (1,100 reviews)
"Great property with respectable staff and clean room."
Ananya Bhargavi
The price is RM634
RM924 total
includes taxes & fees
2 Aug - 3 Aug
9.2 out of 10, Wonderful, (1,015 reviews)
"Excellent hotel"
Laurence
The price is RM811
RM1,082 total
includes taxes & fees
2 Aug - 3 Aug
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Top San Diego Hotel Reviews
The Sofia Hotel
10/10 Excellent
Frequently asked questions
Explore a world of travel with Expedia
- 5 Star Hotels in San Diego
- All Inclusive Resorts in San Diego County
- Boutique Hotels in San Diego County
- Budget Hotels in San Diego County
- Gay friendly Hotels in San Diego County
- San Diego County Hotels
- Gay friendly Hotels in Downtown San Diego
- Hotels with free parking in Downtown San Diego
- Pacifica Hotels in Downtown San Diego
- Downtown San Diego Hotels
- Gaslamp Quarter Hotels
- Hotels with Gyms in Hillcrest
- Hotels with Spa in Hillcrest
- Gay friendly Hotels in La Mesa
- Luxury Hotels in La Mesa
- Hotels with free wifi in Lemon Grove
- Hotels with Balcony in Little Italy
- Marina District Hotels
- Hotels with Gyms in Mission Valley
- Hotels near Petco Park
- Boutique Hotels in Point Loma
- Condo Rentals in San Diego
- Hotels near San Diego Convention Center
- Condominium Resorts in San Diego County
- Hostels in San Diego
- Beach Resorts in San Diego
- Budget Hotels in San Diego
- Family friendly Hotels in San Diego
- Gay friendly Hotels in San Diego
- Hotels with Childcare in San Diego
- Hotels with free airport shuttle in San Diego
- Hotels with free parking in San Diego
- Hotels with parking in San Diego
- Hotels with Restaurants in San Diego
- La Quinta Inn & Suites Hotels in San Diego
- Luxury Hotels in San Diego
- Marriott Hotels & Resorts in San Diego
- Pet friendly Hotels in San Diego
- Relais & Chateaux Hotels in San Diego
- Romantic Hotels in San Diego
- San Diego Hotels
- Resorts in San Diego
- Aparthotels in San Diego
- Budget Hotels in South Bay
- Family friendly Hotels in South Bay
- Hotels with Airport Shuttle in South Bay
- Hotels with kitchenette in South Bay
- Hotels near The Rady Shell at Jacobs Park
- Hotels near Waterfront Park
- Flights to Coronado Island
- Flights from San Diego Intl.
- Alaska Airlines Minneapolis (MSP) to San Diego (SAN) flights
- British Airways London (LHR) to San Diego (SAN) flights
- Singapore Airlines Penang (PEN) to San Diego (SAN) flights
- Flights from Acapulco (ACA) to San Diego (SAN)
- Flights from Aitutaki (AIT) to San Diego (SAN)
- Flights from Atlanta (ATL) to San Diego (SAN)
- Flights from Kalamazoo (AZO) to San Diego (SAN)
- Flights from Beaumont (BPT) to San Diego (SAN)
- Flights from Colorado Springs (COS) to San Diego (SAN)
- Flights from Mosinee (CWA) to San Diego (SAN)
- Flights from Dallas (DAL) to San Diego (SAN)
- Flights from Denver (DEN) to San Diego (SAN)
- Flights from Dera Ismail Khan (DSK) to San Diego (SAN)
- Flights from Des Moines (DSM) to San Diego (SAN)
- Flights from Detroit (DTW) to San Diego (SAN)
- Flights from Buenos Aires (EZE) to San Diego (SAN)
- Flights from Kuala Lumpur (KUL) to San Diego (SAN)
- Flights from Los Angeles (LAX) to San Diego (SAN)
- Flights from Lille (LIL) to San Diego (SAN)
- Flights from Linkoping (LPI) to San Diego (SAN)
- Flights from Laval (LVA) to San Diego (SAN)
- Flights from Lynchburg (LYH) to San Diego (SAN)
- Flights from Matamoros (MAM) to San Diego (SAN)
- Flights from Harrisburg (MDT) to San Diego (SAN)
- Flights from Minneapolis (MSP) to San Diego (SAN)
- Flights from New York (NYC) to San Diego (SAN)
- Flights from Philadelphia (PHL) to San Diego (SAN)
- Flights from Russian Mission (RSH) to San Diego (SAN)
- Flights from San Pedro Sula (SAP) to San Diego (SAN)
- Flights from San Antonio (SAT) to San Diego (SAN)
- Flights from San Francisco (SFO) to San Diego (SAN)
- Flights from Salt Lake City (SLC) to San Diego (SAN)
- Flights from Sacramento (SMF) to San Diego (SAN)
- Flights from Orange County (SNA) to San Diego (SAN)
- Flights from Vernal (VEL) to San Diego (SAN)
- Flights from Edmonton (YEG) to San Diego (SAN)
- Flights from Halifax (YHZ) to San Diego (SAN)
- Flights from Toronto (YYZ) to San Diego (SAN)