Top 10 Hotels Near Mission Bay in San Diego for 2026

A sunny beach with people sunbathing and swimming, palm trees, and buildings in the background.

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Our top choices for Mission Bay hotels

A coastal cityscape with buildings along the beach, waves in the foreground, and a clear sky.

A person grilling outdoors with a wooden fence, a grill, and a potted plant in the background.

A wooden deck with a wooden fence, string lights, a chair, and a small table.

A spacious living room with a leather sofa, a wooden coffee table, and a dining area with green chairs.

1. ITH Mission Beach Backpacker Hostel

Central Mission Beach, 2.4 km from Mission Bay

Fernando

RM337

RM380 total

includes taxes & fees

1 Nov - 2 Nov

A pool area with lounge chairs and a hot tub, overlooking the ocean.

A balcony with a view of the beach, two blue chairs, a small table, and a potted plant.

A hotel room with a bed, a desk, a small kitchenette, and a view of the ocean.

A living room with a grey sofa, red armchairs, a wooden coffee table, and a bookshelf filled with books.

2. The Wayfarer San Diego

Mission Beach, 3 km from Mission Bay

Lisa

RM675

RM776 total

includes taxes & fees

10 Nov - 11 Nov

A modern building with multiple windows, outdoor seating, and a chessboard.

A Hampton Inn & Suites by Hilton building with a covered entrance and a prominent sign.

A hotel with a pool, lounge chairs, and a sunset sky.

A modern hotel reception area with a marble counter, a 'Welcome to Hampton' sign, and a reception desk.

3. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

3.2 km from Mission Bay

Tammy

RM656

RM754 total

includes taxes & fees

1 Nov - 2 Nov

A pool area with a hot tub, lounge chairs, and umbrellas.

A hotel room with a bed, a lamp, and a box of pizza.

A dining table set for a wedding with floral centerpieces and candles, overlooking a marina with boats.

A marina with boats, a bridge, and a building with a pool and palm trees.

4. The Dana on Mission Bay

Mission Bay, 1.6 km from Mission Bay

andrea

RM731

RM957 total

includes taxes & fees

15 Nov - 16 Nov

A modern restaurant with high tables, booths, and a central island.

A modern living room with a stone fireplace, two sofas, ottomans, and a patterned rug.

A modern reception area with a wooden ceiling, a large globe artwork, and a snack display.

A gym with treadmills, exercise bikes, and a pool area visible through glass doors.

5. Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Pacific Beach, 2.9 km from Mission Bay

Wade

RM492

RM566 total

includes taxes & fees

15 Nov - 16 Nov

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

A modern reception desk with a woman standing behind it, a large digital display, and a sign for 'Haightay Inn Express'.

A swimming pool area with a pool ladder, a chair, and a door.

A snack and beverage vending area with a refrigerator and shelves stocked with snacks and drinks.

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 km from Mission Bay

Regina

RM518

RM596 total

includes taxes & fees

27 Oct - 28 Oct

An outdoor dining area with tables and chairs, overlooking a beach and ocean.

A serene garden with a pond, lush greenery, and a gazebo.

A large, multi-deck riverboat with a white exterior and multiple levels of balconies.

A waterfront property with a pathway lined by palm trees and string lights, leading to a building with a dock and boats.

7. Bahia Resort Hotel

Central Mission Beach, 2 km from Mission Bay

Ryan

RM644

RM966 total

includes taxes & fees

15 Nov - 16 Nov

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

A waterfront hotel with a dock, palm trees, and a view of the water.

A modern building with a curved roof, surrounded by lush tropical vegetation.

An outdoor dining area with tables and chairs, umbrellas, and string lights against a sunset backdrop.

8. Paradise Point Resort & Spa

Mission Bay, 1.3 km from Mission Bay

Jesse

RM849

RM1,192 total

includes taxes & fees

1 Nov - 2 Nov

A modern dining area with tables and chairs, a kitchen area with cabinets and appliances, and a large window.

A room with a wooden cabinet stocked with snacks and a beverage refrigerator.

A gym with treadmills, an elliptical, and dumbbells, with a TV on the wall and large windows.

9. Comfort Inn San Diego - SeaWorld Area

3.1 km from Mission Bay

Anthony

RM434

RM499 total

includes taxes & fees

9 Nov - 10 Nov

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

A modern dining area with a glass table, candles, and wicker chairs.

A spacious lobby with a high ceiling, large windows, and a view of palm trees.

A coastal hotel with multiple buildings, a marina with boats, and a beach area.

10. San Diego Mission Bay Resort

Mission Bay, 1.5 km from Mission Bay

Mary

RM853

RM1,197 total

includes taxes & fees

28 Oct - 29 Oct

A couple walking through a wooden door into a building with a tropical garden view.

A room with a large glass door leading to a grassy deck with a table and chairs, overlooking a marina with boats and a clear sky.

An outdoor patio with seating, a fire pit, and a view of the ocean.

A spacious lobby with a waterfall feature, wooden decor, and comfortable seating areas.

11. Catamaran Resort and Spa

Mission Beach, 2.8 km from Mission Bay

James

RM813

RM1,152 total

includes taxes & fees

15 Nov - 16 Nov

A resort pool with a lazy river, palm trees, and a view of the ocean.

A balcony with two chairs and a small table, overlooking a marina with numerous boats and a cityscape in the background.

A marina with boats docked, a covered outdoor dining area with red chairs and tables, and a view of the marina in the background.

An aerial view of a marina with numerous boats docked, a bridge connecting to the mainland, and surrounding greenery.

12. Hyatt Regency Mission Bay Spa and Marina

Mission Bay, 1.9 km from Mission Bay

Megan

RM865

RM1,211 total

includes taxes & fees

5 Nov - 6 Nov

A modern reception area with a large arched window, a reception desk, a blue sofa, and a round wooden table.

A hot tub with metal railings, surrounded by palm trees and a fence, with a building in the background.

A modern kitchen area with a wooden counter, various food items, and kitchen appliances.

A modern hotel room with a bed, a desk, a chair, a TV, and a sofa.

13. Best Western San Diego Pacific Beach/Mission Bay

2.5 km from Mission Bay

Guadalupe Pina

RM427

RM491 total

includes taxes & fees

22 Oct - 23 Oct

A beach with palm trees, a sandy shore, and the ocean.

A beach view from a balcony with a white railing, a palm tree, and a sandy beach in the background.

A hotel room with a bed, two bedside tables, a nightstand, a sliding glass door to a balcony with outdoor seating, and a view of the outside.

A spacious kitchen with a refrigerator, microwave, and dining area with chairs and a table.

14. Surfer Beach Hotel

Pacific Beach, 3 km from Mission Bay

Amanda

RM547

RM618 total

includes taxes & fees

16 Nov - 17 Nov

A living room with a large window, a flat-screen TV, and a patterned rug.

A dining area with multiple tables and chairs, a television mounted on the wall, and a window with blinds.

A hotel room with a glass table, two wooden chairs, a laptop, a pen, and a lamp.

A multi-story hotel with a yellow facade, covered outdoor seating area, and a parking lot.

15. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Arman

RM460

RM528 total

includes taxes & fees

20 Oct - 21 Oct

A beachside restaurant with outdoor seating overlooking the ocean, featuring a sign for 'Ocean's Ice Cream'.

A wooden deck with a hammock, chairs, and a table.

A wooden interior with a wooden table and benches, a vending machine, and a colorful mural on the wall.

A kitchen with wooden walls, stainless steel appliances, and various utensils and containers hanging on the wall.

16. ITH Beach Bungalow Surf Hostel

Pacific Beach, 3.2 km from Mission Bay

Luke

RM315

RM355 total

includes taxes & fees

15 Nov - 16 Nov

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

A spacious room with large windows, modern furniture, and decorative lighting fixtures.

A hotel room with two beds, a desk, a chair, a sofa, and a small table.

A modern hotel lobby with a reception desk, bar area, and seating with bar stools and cushioned chairs.

17. Wyndham Garden San Diego Near SeaWorld

2.8 km from Mission Bay

Nayla

RM392

RM450 total

includes taxes & fees

27 Oct - 28 Oct

A hotel room with two beds, a desk, a chair, a TV, and a painting on the wall.

A hotel reception desk with a coffee machine, a glass display case with pastries, and a lamp.

A kitchen with a sink, cabinets, a refrigerator, and a dining area with two chairs and a table.

18. Heritage Inn San Diego

2.5 km from Mission Bay

amanda

RM245

RM282 total

includes taxes & fees

26 Oct - 27 Oct

A motel with a covered entrance, a sign indicating the name and price, and a paved driveway.

A swimming pool with a tiled edge, surrounded by a white fence and white plastic chairs.

A hotel room with two beds, a desk, a chair, a window with curtains, and a door.

A room with a table, chair, potted plants, a coffee station, and a mirror on the wall.

19. E-Z 8 Motel Old Town

Old Town San Diego, 3.1 km from Mission Bay

Joyce

RM239

RM274 total

includes taxes & fees

18 Oct - 19 Oct

A hotel room with two beds, a wooden dresser, a mirror, a window with curtains, and wall art.

A motel with a sign reading 'Mission Bay Motel' and a building number '4221'.

A motel sign, parked cars, and palm trees.

A swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a building with balconies.

20. Mission Bay Motel

Pacific Beach, 3 km from Mission Bay

Qiana

RM312

RM352 total

includes taxes & fees

1 Nov - 2 Nov

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Compare popular hotels close to Mission Bay

Property	Property class	Guest rating
ITH Mission Beach Backpacker Hostel	9.4 Exceptional 234 reviews	View
The Wayfarer San Diego	9.4 Exceptional 1,952 reviews	View
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town	9.2 Wonderful 1,423 reviews	View
The Dana on Mission Bay	9.0 Wonderful 4,469 reviews	View
Fairfield Inn & Suites by Marriott San Diego Pacific Beach	8.8 Excellent 972 reviews	View

Top Mission Bay Hotel Reviews

Catamaran Resort and Spa

10/10 Excellent

"Great"

Bahia Resort Hotel

10/10 Excellent

"I’ve been vacationing at The Bahia for well over a decade and I ALWAYS have a great time there. It’s perfectly located on the bay, and a short walk to the beach. The staff is nice and the manager (Shahin) is a great guy….very friendly and respectful. He went out of his way to make sure my family and I had a wonderful time. I’ll stay there every time I go back to San Diego."

Handlery Hotel

8/10 Good

"The staff from the restaurant were amazing!!! They went above and beyond!!! I forgot there names but it was a female and two males working when we ate at the restaurant, we ate there three times. They were so nice, polite and so attentive!!! Pamela lady from the front desk when we checked out she was so rude and had a mean face didn’t even greet us at all and I asked her a couple of questions didn’t even answered me at all I asked her if I was getting my invoice thru email didn’t even answer me either. Just so rude"

Hilton Garden Inn San Diego Old Town/SeaWorld Area

10/10 Excellent

"Easy parking, easy check in/check out nice location; walking distance to old town restaurants and bars. Definitely our go to location when staying in San Diego."

Ocean Beach Hotel

8/10 Good

"Nice stay with ocean view from balcony. Very clean room. It’s an older property but has been updated nicely. Bed was very comfortable. Staff was very nice. Environmental services staff were very friendly and kept the property looking great. The street stays busy into the night but it’s pretty soundproof in the room. Plenty of places to eat within walking distance. There were a few homeless folks in the area but it was not a problem. Mostly an older crowd, I didn’t see any kids at all. I would visit again if I were in the area."

Comfort Inn San Diego - SeaWorld Area

10/10 Excellent

"Room was very clean, we forgot our toiletries but the hotel got everything you can need in the room, staff were very friendly, we only got a coffee from the breakfast and we love it!, AC was easy to use, overall very satisfied with their service, thank you! I do recommend it"

Paradise Point Resort & Spa

10/10 Excellent

"Room was clean and spacious with lots of drawers for storage. Small refrigerator, no microwave. Lots of extra towels, and an extra pillow. Ironing board and iron, nice spa quality toiletries. Parking close to room but shocked at $50/night charge for parking. Gardens and ponds everywhere, beautiful. Lots of squirrels, birds. Gazebos to hang out in. Several swimming pools, but no outside beverages aloud inside. At night, lots of fire pits available. I don’t recommend premium rooms by the bay if you plan on swimming. Sign said bacteria in water swimming not recommended but view is nice, with several fire pits (bring your own wood)."

The Dana on Mission Bay

10/10 Excellent

"The view of the marina is amazing and the entire premises feels like a relaxing resort. Because it is."

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

8/10 Good

"The hotel was new and very clean, but the breakfast could have been better. Also, we needed an extra blanket; we asked the staff repeatedly, but no one paid any attention. Eventually, we went to the reception desk and managed to get one."

Other attractions near Mission Bay

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?

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beach near Mission Bay

Why not spend a lazy afternoon at beach near Mission Bay during your trip to San Diego?

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beach near Mission Bay Park

Why not spend a lazy afternoon at beach near Mission Bay Park during your trip to San Diego?

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Crown Point Shores

Why not spend a lazy afternoon at Crown Point Shores during your trip to San Diego? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.

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North Cove Beach

Why not spend a lazy afternoon at North Cove Beach during your trip to San Diego?

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The Dana On Mission Bay, BW Premier Collection

After visiting The Dana On Mission Bay, BW Premier Collection, make a plan to see the other sights and activities in San Diego.

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Bahia Point Beach

Why not spend a lazy afternoon at Bahia Point Beach during your trip to San Diego?

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Marina Village Conference Center

Learn about the events happening in Marina Village Conference Center during your trip to San Diego.

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Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Mission Bay?

Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.

How many hotels will I find near Mission Bay?

Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, SOMA - San Diego and San Diego Black Ensemble Theater.

Hotels near Mission Bay

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Treat yourself

Be picky

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Our top choices for Mission Bay hotels

1. ITH Mission Beach Backpacker Hostel

2. The Wayfarer San Diego

3. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

4. The Dana on Mission Bay

5. Fairfield Inn & Suites by Marriott San Diego Pacific Beach

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

7. Bahia Resort Hotel

8. Paradise Point Resort & Spa

9. Comfort Inn San Diego - SeaWorld Area

10. San Diego Mission Bay Resort

11. Catamaran Resort and Spa

12. Hyatt Regency Mission Bay Spa and Marina

13. Best Western San Diego Pacific Beach/Mission Bay

14. Surfer Beach Hotel

15. GreenTree Inn San Diego Mission Bay

16. ITH Beach Bungalow Surf Hostel

17. Wyndham Garden San Diego Near SeaWorld

18. Heritage Inn San Diego

19. E-Z 8 Motel Old Town

20. Mission Bay Motel

Compare popular hotels close to Mission Bay

Top Mission Bay Hotel Reviews

Catamaran Resort and Spa

Bahia Resort Hotel

Handlery Hotel

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Ocean Beach Hotel

Comfort Inn San Diego - SeaWorld Area

Paradise Point Resort & Spa

The Dana on Mission Bay

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Other attractions near Mission Bay

Ski Beach

beach near Mission Bay

beach near Mission Bay Park

Crown Point Shores

North Cove Beach

The Dana On Mission Bay, BW Premier Collection

Bahia Point Beach

Marina Village Conference Center

Frequently asked questions