A lighthouse on a rocky coastline with the ocean in the foreground.

San Juan Islands Spa Hotels

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Islands Hotels with Spa

Tonight
22 Sept - 23 Sept
Tomorrow
23 Sept - 24 Sept
This weekend
25 Sept - 27 Sept
Next weekend
2 Oct - 4 Oct

Our top choices for San Juan Islands hotels with a spa

A person lying on a bed with a blanket, another person with a tattoo on their arm touching their shoulder.
A hotel lobby with a reception desk, seating area, and a view of the adjacent room.
A waterfront promenade with benches, a gazebo, and a large white boat docked at a pier.
A living room with a sofa, armchairs, a coffee table, and a fireplace.

1. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
  • Discover a serene spa sanctuary with 3 treatment rooms, a sauna, and hot tub nestled near the Whale Museum for ultimate relaxation.
RM938
RM1,038 total
includes taxes & fees
5 Oct - 6 Oct
Earthbox Inn & Spa
A balcony with a view of a marina and a forested shoreline.
A wooden boardwalk leading to a building with multiple windows and lights.
A restaurant with stone walls, wooden tables, and chairs. There are large windows allowing natural light.
An outdoor dining area with tables and chairs, a view of the water, and umbrellas providing shade.

2. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
  • Indulge in rejuvenating massage therapy and soak in the hot tub while enjoying stunning island views at this peaceful Lopez Island retreat.
RM730
RM805 total
includes taxes & fees
6 Oct - 7 Oct
Lopez Islander Resort
A room with two beds, a nightstand, a lamp, and framed pictures on the wall.
A serene lakeside setting with string lights, wicker chairs, and a fire pit area.
A waterfront hotel with multiple docked boats, a pier, and a view of the surrounding forested area.
A hotel with a large building, a pond in front, and trees around.

3. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
  • Serene waterfront resort offers hot stone massages, aromatherapy, and facials at full-service spa amid natural beauty.
RM873
RM1,012 total
includes taxes & fees
15 Oct - 16 Oct
Roche Harbor Resort
A modern building with a stone facade, large windows, and a sign for 'The Chrysalis' spa.
A stone fireplace with a fire, a bench with a cushion, and a view of a garden with rocks and trees.
A spacious lobby with a wooden staircase, comfortable seating areas, and large windows offering views.
A restaurant with tables set for dining, large windows offering a view of the sea, and a chalkboard menu.

4. Chrysalis Inn & Spa Bellingham, Curio Collection by Hilton

Chrysalis Inn & Spa Bellingham, Curio Collection by Hilton
South Hill
  • Retreat to a waterfront spa haven with a steam room, hot stone massages, and cosy in-room fireplaces for luxurious relaxation.
RM833
RM939 total
includes taxes & fees
18 Oct - 19 Oct
Chrysalis Inn & Spa Bellingham, Curio Collection by Hilton
A lounge area with wicker furniture, a fireplace, and a bar area.
A waterfront restaurant with a red exterior and a sign reading "PACKERS Oyster Bar".
A lakeside view with a wooden deck, Adirondack chairs, and a fire pit.
A golf course with a pond, surrounded by dense forest and residential buildings.

5. Semiahmoo Resort Golf & Spa, Trademark Collection by Wyndham

Semiahmoo Resort Golf & Spa, Trademark Collection by Wyndham
Blaine
  • Soothing coastal spa retreat with bay views offers rejuvenating aromatherapy and hot stone massages for a tranquil escape.
RM858
RM1,117 total
includes taxes & fees
11 Oct - 12 Oct
Semiahmoo Resort Golf & Spa, Trademark Collection by Wyndham
A massage therapy room with two clients receiving back massages.
A spacious lobby with a long reception desk, multiple seating areas, and large windows offering views of the outdoors.
A spacious living room with a sofa, armchairs, a coffee table, and a dining area with chairs.
A hotel corridor with stone walls, wooden benches, and a 'HOTEL' sign.

6. Silver Reef Casino Resort

Silver Reef Casino Resort
Ferndale
  • Experience rejuvenating spa treatments at this tranquil resort with lush gardens and indoor pool for ultimate relaxation.
RM395
RM426 total
includes taxes & fees
12 Oct - 13 Oct
Silver Reef Casino Resort
A hotel with a waterfront patio, outdoor seating, and a view of the lake.
A hotel room with a large bathtub, a bed with a white bedspread, a green pillow, and a view of the outside.
A hotel with a central building, a tower, and a view of the water.
A modern bathroom with a glass-enclosed shower, a large bathtub, and a mirrored wall reflecting a bedroom with a bed and curtains.

7. Hotel Bellwether

Hotel Bellwether
Bellingham City Center
  • Soothe your spirit in this bayside sanctuary with waterfront views and four dedicated couples treatment rooms.
RM841
RM1,004 total
includes taxes & fees
6 Oct - 7 Oct
Hotel Bellwether
A hotel lobby with a wooden staircase, a reception desk with glass top, and a display of flowers.
A cozy living room with a stone fireplace, leather sofas, wooden furniture, and large windows.
A two-story house with a balcony, a stone wall, and a garden with flowers and shrubs.
A room with two wooden chairs with patterned cushions, a small table with a lamp, and a television on a stand.

8. The Heron Inn & Day Spa

The Heron Inn & Day Spa
La Conner
  • Experience spa serenity at this bed & breakfast with Ayurvedic treatments and Swedish massages for complete rejuvenation.
RM631
RM699 total
includes taxes & fees
4 Oct - 5 Oct
The Heron Inn & Day Spa
A reception desk with a computer, a clock, and a small plant.
A multi-story hotel with a prominent entrance, a covered outdoor area, and a parking lot.
A modern bar area with a long counter, multiple bar stools, hanging pendant lights, and a variety of bottles and glasses on shelves.
A modern restaurant interior with a central dining area featuring a white table with a geometric table runner, yellow chairs, and pendant lighting.

9. Oxford Suites Bellingham

Oxford Suites Bellingham
Meridian
  • Indulge in restorative relaxation at this hotel featuring a full-service spa, sauna, and hot tub for ultimate wellness.
RM473
RM584 total
includes taxes & fees
5 Oct - 6 Oct
Oxford Suites Bellingham
View all properties

Choose what matters most at spa hotels in San Juan Islands

Pool
Breakfast included
Hot tub
4 stars
5 stars

Top San Juan Islands Hotel Reviews

Roche Harbor Resort

Roche Harbor Resort

10/10 Excellent
"The Hotel de Haro is from an antique vintage on San Juan Island.......built in 1886........it has original wood throughout. It has original style for the rooms with bath rooms renewed. 50 years ago my husband and I came here for our Honeymoon....September 18th 1976 was our wedding date.............came here a couple days later......it was spectacular to our delight. We have returned to experience it again and all the improvements......is wonderful to see and be here again woith my Beloved......."
Thomas 1-night trip
Posted 4 days ago
Roche Harbor Resort
Deer Harbor Inn

Deer Harbor Inn

8/10 Good
"It’s very basic considering the cost. The bed is very soft and not particularly comfortable with 2 people of different weights. Everything just felt a bit thrown together, which is ok but at this price point we had higher expectations."
Clare 1-night trip
Posted 13 days ago
Deer Harbor Inn
Friday Harbor House

Friday Harbor House

8/10 Good
"The staff is not consistent. The restaurant greeter is not customer first. The large round table in the lobby means there’s literally nowhere to sit or congregate. Third floor has free coffee and sodas in the morning in the central area while there’s nothing on the main floor common area - for a very expensive room. Views are superb."
Heather 1-night trip
Posted 2 weeks ago
Friday Harbor House

Explore a world of travel with Expedia