𝗧𝗢𝗣 𝗛𝗼𝘁𝗲𝗹𝘀 𝗶𝗻 Isahaya from RM180 (2026) - Fully Refundable Options

An aerial view of a rural landscape with fields, a small town, and distant mountains.

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Our top choices for Isahaya hotels

A hotel room with a bed, a desk, a chair, a window with a city view, and a wall-mounted TV.

A laundry facility with four washing machines and four dryers, each labeled with a number.

A restaurant with a buffet counter, wooden flooring, and pendant lighting.

A reception desk with a computer, a plant, and a cash register.

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

Isahaya

KITANO

RM360

RM396 total

15 Oct - 16 Oct

A view through a window with a view of a garden with various trees and bushes.

A modern lobby with seating areas, a bar, and a bookshelf.

A chef performing a flambé with fire on a table.

A traditional Japanese-style hotel room with tatami flooring, two beds, a television, and a view of greenery through large windows.

2. Hotel Flags Ishihaya Nagasaki

Isahaya

cat

RM207

RM228 total

13 Oct - 14 Oct

A multi-story building with a flat facade, balconies, and a parking lot in front.

A spacious lobby with a reception desk, leather seating area, and ping pong tables.

A hotel room with two beds, a desk with a computer, a sink, and an air conditioning unit.

A spacious room with a ping pong table, two hanging chairs, and patterned carpet.

3. Tennen Onsen Hotel Kinshai

Isahaya

HIROKI

RM233

RM256 total

5 Oct - 6 Oct

A hotel lobby with a reception desk, seating area, and large windows.

A hotel room with two beds, a desk, a chair, an air conditioning unit, and a painting on the wall.

A laundry facility with multiple coin-operated washers and dryers, a step for access, and a potted plant.

4. Hotel Route-Inn Isahaya Inter

Isahaya

?????

RM349

RM384 total

4 Oct - 5 Oct

A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

A multi-story hotel with a modern design, featuring a flat facade and numerous windows.

A meal in a compartmentalized container with rice, macaroni, vegetables, and fried items.

A hotel room with two beds, a desk with a computer, a chair, a television, and a window with curtains.

5. New Station Hotel

Isahaya

Kenji

RM261

RM287 total

6 Oct - 7 Oct

A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

A hotel room with a bed, a desk with a computer, a chair, and a window with curtains.

A spacious lounge area with multiple sofas and a coffee table, large windows offering a view of the outdoors, and a chandelier hanging from the ceiling.

A bento box with rice, macaroni, vegetables, and fried items.

6. New Station Hotel Premiere

Isahaya

James

RM245

RM269 total

29 Oct - 30 Oct

A modern building entrance with a set of stairs leading to a glass door entrance.

A hotel room with a sofa, two beds, a TV, and a window with curtains.

A reception area with a wooden reception desk, a seating area with a sofa, and a bookshelf.

A laundry room with washing machines, a dryer, and two chairs.

7. Isahaya Terminal Hotel

Isahaya

koujirou

RM273

RM300 total

4 Oct - 5 Oct

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

A modern living room with a red sofa, a glass coffee table, a TV mounted on a wooden panel, and a view of the outdoors through a window with curtains.

An outdoor deck with wicker furniture, a wooden table, and umbrellas.

8. Morino Villa & Resort

Isahaya

Maximo

RM320

RM352 total

6 Oct - 7 Oct

A modern multi-story building with a parking lot in front.

A balcony with a view of a cityscape, including a body of water and mountains.

A reception desk at KIKITSU STATION HOTEL with a digital clock, a phone, and a pen holder.

A modern bathroom with multiple sinks, mirrors, and hand dryers.

9. KIKITSU Station Hotel

Isahaya

Barb

RM236

RM259 total

16 Oct - 17 Oct

A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

A modern, well-lit dining area with long tables and chairs, a kitchen in the background, and large windows offering a view of greenery outside.

A hotel room with a bed, a desk, and a chair.

A reception area with an orange counter, white walls, and a wooden floor.

10. Comfort Inn Nagasaki Airport

Omura

Asya

RM181

RM199 total

4 Oct - 5 Oct

A modern reception area with a glass partition, a reception desk, seating area, and large windows.

A modern bathroom with a bathtub, a sink, and a toilet.

A buffet setup with various food items, a white tablecloth-covered table, and a modern interior with large windows and ceiling lights.

A hotel room with two beds, each with a pillow and a folded towel. There is an air conditioning unit above the window and wall-mounted lights above the beds.

11. Omura Station Hotel Nagasaki Airport

Omura

Kazuhiko

RM217

RM238 total

4 Oct - 5 Oct

The entrance to Omura Central Hotel with a glass facade, a red carpet, and bicycles parked outside.

A multi-story building with balconies, a parking lot, and a view of a cityscape with mountains in the distance.

A hotel room with a bed, bedside lamps, a TV, a desk, and a mini-fridge.

A Japanese-style building with a garden.

12. Omura Central Hotel

Omura

Jan

RM339

RM373 total

18 Oct - 19 Oct

A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

A modern dining area with multiple tables and chairs, recessed ceiling lighting, and large windows.

13. Omura Station Hotel

Omura

Yasuhiko

RM262

RM288 total

19 Oct - 20 Oct

A hotel room with a bed, a desk with a computer, a television, and a microwave.

A row of white front-loading washing machines with baskets on top, lined up against a wall with a wooden floor.

A compact hotel structure with a sign indicating 'Hotel R9 The Yard' and '19 Hotels Group'.

A reception area with a wooden counter, two wall-mounted speakers, and a small table.

14. HOTEL R9 The Yard Omura

Omura

Tsz Kin

RM164

RM180 total

4 Oct - 5 Oct

A spiral staircase with a clock at the top, a stained glass window, and a wooden sculpture.

A multi-story hotel with a white facade, multiple balconies, and a clear blue sky in the background.

A courtyard with tiled flooring, outdoor seating, and a staircase leading to an upper level.

15. Hotel Monterey Nagasaki

Nagasaki

TAKAO

RM232

RM301 total

12 Oct - 13 Oct

A conference room with a long table, white chairs, chandeliers, and a wooden door.

A traditional Japanese room with tatami flooring, a low table with cushions, a television on a cabinet, and a view of greenery outside.

A buffet setup with two large metal pots, several white bowls, and a toaster oven.

A multi-story building with a modern architectural design, featuring a prominent central tower and multiple windows.

16. HOTEL LiVEMAX Nagasaki Airport

Omura

Gregory

RM154

RM186 total

4 Oct - 5 Oct

A buffet with a variety of food items, a seating area with chairs, and a view of the city through large windows.

A spacious lobby with a polished marble floor, a central seating area, and a high ceiling with recessed lighting.

A traditional Japanese-style room with two beds, a wooden chair, a small table, and a large window with a view.

17. THE GLOBAL VIEW Nagasaki

Nagasaki

Chris

RM303

RM334 total

5 Oct - 6 Oct

A koi pond with a stone edge, surrounded by lush greenery and a wooden fence.

A modern hotel with multiple floors, a canal in front, and illuminated windows.

A modern reception area with a reception desk, seating, and a large window with blinds.

A room with a large window featuring stained glass, a stone wall, and a small indoor water feature.

18. Dormy Inn Nagasakiekimae Hot Springs

Nagasaki

Weizhuang

RM353

RM388 total

4 Oct - 5 Oct

A clear indoor pool with a water fountain feature, surrounded by dark stone walls and a wooden ceiling.

A hotel room with two beds, beige walls, a painting of flowers, and a window.

A view of a coastal cityscape with a prominent building and a parking lot.

A view through a window with bamboo plants and a concrete wall.

19. Jisco Hotel Obama Onsen

Obama Onsen

Alexander

RM228

RM252 total

16 Oct - 17 Oct

A tall hotel with multiple floors and a prominent 'INN' sign at the top.

A reception area with a marble floor, a reception desk, a standing desk, and a digital display advertising the Toyota Inn Club Card.

A hotel room with two beds, a desk, a chair, a TV, and an air conditioning unit.

A laundry facility with multiple washing machines and dryers, a digital control panel, and a small wooden cabinet.

20. Toyoko Inn Nagasaki Ekimae

Nagasaki

JUNKO

RM247

RM271 total

12 Oct - 13 Oct

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Stay near popular Isahaya attractions

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

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Konagai Culture Hall

6.0/10 (2 reviews)

This community hub hosts local events and offers a welcoming library for quiet study. Look for the whimsical fruit-shaped bus stops nearby—they make for delightful photo opportunities.

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Sazanka Herb Museum

7.0/10 (2 reviews)

This fragrant highland garden showcases a diverse collection of aromatic herbs in a serene setting. Explore the grounds, join an aroma class, or savour herbal teas at the garden café after your botanical journey.

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Todoroki Fall

6.0/10 (1 review)

This 12-meter waterfall creates a thunderous roar as it cascades into crystal-clear pools below. Explore the surrounding valley's lush trails, where 30 smaller falls create a tranquil forest symphony.

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Kantaku no Sato

7.4/10 (3 reviews)

This educational complex showcases Isahaya Bay's reclamation history and marine life through its Kantaku Museum and Mutsugoro Aquarium. Enjoy horseback riding, boating, or a 100-meter zipline in the adventure park.

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Megane Bridge

This historic double-arch stone bridge creates the illusion of eyeglasses when reflected in water. Visit Isahaya Park to see this Important Cultural Property, especially beautiful during spring's Azalea Festival.

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Tsukinooka Park

Explore the great outdoors at Tsukinooka Park, a lovely green space in Isahaya. Wander the Chinatown and waterfront in the area.

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Kannonji Temple

6.0/10 (1 review)

Kannonji Temple offers a serene retreat with traditional Buddhist architecture in Isahaya City, Nagasaki. Visit in early morning to experience the peaceful grounds and cultural artefacts in contemplative solitude.

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Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialities.

See all hotels in Isahaya

A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

Candeo Hotels Nagasaki Shinchi Chinatown

10/10 Excellent

"Great central location. Staff at breakfast buffet exceptionally warm and friendly."

Hotel Forza Nagasaki

10/10 Excellent

"The rooms are well designed and taken care of. :)"

JR KYUSHU HOTEL Nagasaki

10/10 Excellent

"The location was incredibly convenient, right next to the station and directly connected to a convenience store and shopping facilities."

Hotel Okura JR Huis Ten Bosch

10/10 Excellent

"I enjoyed my stay"

Dormy Inn Nagasakiekimae Hot Springs

10/10 Excellent

"Hot bath at the top floor is amazing! Breakfast spread was huge and the food was delicious. There's also free ramen for supper."

Hotel Amsterdam Huis Ten Bosch

10/10 Excellent

"방 컨디션도 좋도 직원들이 친절해요. 테마파크 중심에 있어서 어디든 가기 좋은 위치예요"

Wataya Besso

10/10 Excellent

"露天風呂"

Belleview Nagasaki Dejima

10/10 Excellent

"A very friendly and wel ome staff and front desk with management care and hospitality. Lool.forward to future booking in a tranquility and peaceful hotel"

Hotel Nikko Huis Ten Bosch

8/10 Good

"Staff services"

More cheap stays in Isahaya

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

RM174

RM191 total

5 Oct - 6 Oct

5.2/10 (15 reviews)

Jisco Hotel Obama Onsen

Obamacho Minamihonmachi - 145-2 Unzen Nagasaki

RM228

RM252 total

16 Oct - 17 Oct

Tennen Onsen Hotel Kinshai

22-12 Saiwaimachi Isahaya Nagasaki

RM233

RM256 total

5 Oct - 6 Oct

8.2/10 Very good! (34 reviews)

Isahaya Terminal Hotel

18-1 Eishohigashimachi Isahaya Nagasaki

RM273

RM300 total

4 Oct - 5 Oct

Grand Base Nagasaki City

2 39 Tamazonomachi Nagasaki Nagasaki Prefecture

RM326

RM358 total

4 Oct - 5 Oct

8.2/10 Very good! (127 reviews)

HOTEL URO - hostel

6-10 Kajiya-machi Nagasaki Nagasaki

RM360

RM396 total

3 Nov - 4 Nov

9/10 Wonderful! (2 reviews)

Frequently asked questions

What's the best place for a stay in Isahaya?

Based on our traveller data, New Station Hotel Premiere is one of the top choices for your stay. This hotel offers free parking and free WiFi. Tennen Onsen Hotel Kinshai is another good choice for your trip. See all available top hotels, or vacation rentals in Isahaya.

What are some of the best holiday rentals that Isahaya has to offer?

Rakuten STAY HOUSE x WILLSTYLE SASEBO: This holiday home rental outside of Isahaya has air conditioning and laundry facilities to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop and a microwave. See all vacation rentals in Isahaya.

If I need to cancel my hotel reservation in Isahaya, will I receive a refund?

Yes! Most room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Isahaya.

What are some accommodation options with pools in Isahaya?

STADIUM CITY HOTEL NAGASAKI: Provides a children's pool, an indoor pool and 5 restaurants. View all hotels with pools in Isahaya.

What is the best spa hotel in Isahaya?

Super Hotel Nagasaki Isahaya Natural Hot Spring is a top spa hotel with 152 rooms, free WiFi and off-street parking. Treat yourself to the hot springs at the on-site spa. See all spa hotels in Isahaya.

What's it like staying in Isahaya?

Visitors can enjoy all that Isahaya has to offer, including the parks and monuments. In Isahaya, there are 19 hotels and other accommodation options to choose from. Find out more about Isahaya.

What is there to see in Isahaya?

Landmarks like Isahaya Park, Kantaku no Sato and Megane Bridge might be worth a visit. Natural beauty is on display at Tsukinooka Park, Ikoinomori Takaki and Todoroki Fall. A couple of additional sights to add to your itinerary are Konagai Culture Hall and Sazanka Herb Museum. Take a look at what more there is to see and do in Expedia's Isahaya guide.

What's the seasonal weather like in Isahaya?

The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 9°C. The rainiest months in Isahaya are June, July, August and May, with each month seeing an average of 382 mm of rainfall.

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Car hire Nagasaki

Isahaya hotels from RM180

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Isahaya hotels

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

2. Hotel Flags Ishihaya Nagasaki

3. Tennen Onsen Hotel Kinshai

4. Hotel Route-Inn Isahaya Inter

5. New Station Hotel

6. New Station Hotel Premiere

7. Isahaya Terminal Hotel

8. Morino Villa & Resort

9. KIKITSU Station Hotel

10. Comfort Inn Nagasaki Airport

11. Omura Station Hotel Nagasaki Airport

12. Omura Central Hotel

13. Omura Station Hotel

14. HOTEL R9 The Yard Omura

15. Hotel Monterey Nagasaki

16. HOTEL LiVEMAX Nagasaki Airport

17. THE GLOBAL VIEW Nagasaki

18. Dormy Inn Nagasakiekimae Hot Springs

19. Jisco Hotel Obama Onsen

20. Toyoko Inn Nagasaki Ekimae

Stay near popular Isahaya attractions

Isahaya Park

Konagai Culture Hall

Sazanka Herb Museum

Todoroki Fall

Kantaku no Sato

Megane Bridge

Tsukinooka Park

Kannonji Temple

Learn more about Isahaya

Top Isahaya Hotel Reviews

Candeo Hotels Nagasaki Shinchi Chinatown

Hotel Forza Nagasaki

JR KYUSHU HOTEL Nagasaki

Hotel Okura JR Huis Ten Bosch

Dormy Inn Nagasakiekimae Hot Springs

Hotel Amsterdam Huis Ten Bosch

Wataya Besso

Belleview Nagasaki Dejima

Hotel Nikko Huis Ten Bosch

More cheap stays in Isahaya

Hotel 21

Jisco Hotel Obama Onsen

Tennen Onsen Hotel Kinshai

Isahaya Terminal Hotel

Grand Base Nagasaki City

HOTEL URO - hostel

Frequently asked questions

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