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Hotels near Boot Key Harbor

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Check prices for these dates

Tonight
19 Oct - 20 Oct
Tomorrow
20 Oct - 21 Oct
This weekend
23 Oct - 25 Oct
Next weekend
30 Oct - 1 Nov

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Our top choices for Boot Key Harbor hotels

A marina with several docked boats and a row of small, white cabins with blue roofs.
A modern kitchen with white cabinetry, a wooden countertop, and a built-in microwave.
A modern kitchen with white cabinets, a microwave, and a dining area with a table and chairs.
A compact bedroom with two beds, a small bathroom, and a view of the outdoors.

1. Yacht Haven Marina

Yacht Haven Marina
2.2 km from Boot Key Harbor
United States
Lauren
RM437
RM1,066 total
includes taxes & fees
21 Oct - 22 Oct
Yacht Haven Marina
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
A beach with white chairs and kayaks, palm trees, and a clear view of the ocean.
A bar area with wooden chairs, a bar counter, and a variety of bottles and glasses.
A beach scene with two white chairs, a hammock, and palm trees.

2. Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa
2.4 km from Boot Key Harbor
United States
Clinton
RM867
RM1,220 total
includes taxes & fees
21 Oct - 22 Oct
Isla Bella Beach Resort & Spa
A resort with a pool, lounge chairs, and a view of the ocean.
A modern kitchen with dark countertops, stainless steel appliances, and wooden cabinets.
A dock with boats, a wooden pier, and a distant shoreline with palm trees.
A deck with tables and chairs, overlooking a calm body of water and palm trees.

3. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
1.2 km from Boot Key Harbor
United States
Arianna
RM731
RM937 total
includes taxes & fees
26 Oct - 27 Oct
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
A waterfront dock with boats and a sunset.
A coastal area with a marina, boats, and a small island with buildings.
A beach with a wooden pier, palm trees, and a clear blue sky.

4. Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
1.2 km from Boot Key Harbor
United States
michael
RM400
RM680 total
includes taxes & fees
21 Oct - 22 Oct
Captain Pips Marina & Hideaway
Two hammocks on a sandy beach with a clear blue sky and turquoise water.
A bar area with a view of the ocean, bar stools, umbrellas, and a variety of bottles.
A poolside area with lounge chairs, blue umbrellas, and a fire pit.
An aerial view of a coastal resort with a marina, palm trees, and a large building complex.

5. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
0.8 km from Boot Key Harbor
United States
amy
RM584
RM800 total
includes taxes & fees
26 Oct - 27 Oct
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
A hotel room with two beds, each with a wooden headboard, white bedding, and a bedside table with a lamp.
A spacious living room with a wooden floor, a sofa, a TV, a cabinet, and a sliding glass door leading to a balcony.
A compact living space with a kitchenette, dining area, and seating area.
A dining area with a wooden table and chairs, a chandelier, and a kitchen in the background.

6. Knight's Key Suites

Knight's Key Suites
2.7 km from Boot Key Harbor
United States
Mengqiao
RM322
RM450 total
includes taxes & fees
27 Oct - 28 Oct
Knight's Key Suites
Exterior
A cozy cabin interior with a leather sofa, wooden dining table, and chairs.
Garden
Sun deck

7. Aqua Lodges at 47th Street Gulfside

Aqua Lodges at 47th Street Gulfside
1.9 km from Boot Key Harbor
United States
Lauren
RM551
RM1,194 total
includes taxes & fees
30 Oct - 31 Oct
Aqua Lodges at 47th Street Gulfside
A bar area with a long counter, multiple stools, and a view of the marina with boats.
A cozy seating area with a round table, surrounded by green woven chairs, and a wall adorned with framed photographs.
A gym with kettlebells, medicine balls, and a wooden bench.
A pool area with lounge chairs and umbrellas, surrounded by palm trees and a large tree in the background.

8. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
1 km from Boot Key Harbor
United States
Rick
RM599
RM828 total
includes taxes & fees
9 Nov - 10 Nov
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.
A food truck parked in a lush garden with a brick pathway, surrounded by various plants and a white fence.
A thatched-roof bar area with a large island counter, bar stools, and a television screen.
Two small, single-story buildings with a red and yellow exterior, each with a door and windows, and surrounded by greenery and trees.

9. Tropical Cottages

Tropical Cottages
2.9 km from Boot Key Harbor
United States
Aaron
RM404
RM455 total
includes taxes & fees
21 Oct - 22 Oct
Tropical Cottages
A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.
A buffet setup with various food items and condiments.
A hotel entrance with a covered walkway, palm trees, and a clear blue sky.
A waterfront property with a swimming pool, palm trees, and a white fence.

10. Skipjack Resort & Marina

Skipjack Resort & Marina
1.7 km from Boot Key Harbor
Canada
Justin
RM621
RM864 total
includes taxes & fees
21 Oct - 22 Oct
Skipjack Resort & Marina
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
An aerial view of a marina with multiple boats docked, surrounded by a sandy beach and palm trees.
A beach with lounge chairs, palm trees, and a string of lights.
A clear view of a swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a clear sky.

11. Banana Bay Resort & Marina

Banana Bay Resort & Marina
1.6 km from Boot Key Harbor
United States
Alex
RM517
RM742 total
includes taxes & fees
29 Oct - 30 Oct
Banana Bay Resort & Marina
A swimming pool surrounded by palm trees and lounge chairs.
A spacious living room with a wooden coffee table, a striped sofa, and a television on a wooden cabinet.
A beach scene with a wooden deck, palm trees, and a gazebo-like structure.
A wooden deck with blue chairs overlooking a beach with palm trees and the ocean.

12. Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort
0.7 km from Boot Key Harbor
United Kingdom
Stuart
RM780
RM1,139 total
includes taxes & fees
15 Nov - 16 Nov
Tranquility Bay Beachfront Hotel and Resort
A beach with palm trees, a sandy path, and beach chairs.
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
A floating houseboat with a covered deck and seating area, docked at a marina.
A spacious living area with a gray sectional sofa, wooden beams, and a ceiling fan.

13. Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.9 km from Boot Key Harbor
United States
Susan
RM341
RM995 total
includes taxes & fees
21 Oct - 22 Oct
Aqua Lodge Rentals At Coconut Cay
A bar area with a long counter, bar stools, and a view of the water.
A Marriott Fairfield Inn & Suites with a modern design, featuring a covered entrance and palm trees.
A balcony with a view of a body of water, a pool, and outdoor seating.
A waterfront property with a large building, a smaller structure with a thatched roof, and several boats docked.

14. Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys
8.3 km from Boot Key Harbor
United States
Andrew
RM547
RM616 total
includes taxes & fees
26 Oct - 27 Oct
Fairfield Inn & Suites by Marriott Marathon Florida Keys
A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.
A beach with palm trees, lounge chairs, and a picnic table.
A pool with a view of the ocean and beach chairs.
A view from a balcony overlooking a beach with palm trees, a wooden deck, and a blue picnic table.

15. Seascape Resort & Marina

Seascape Resort & Marina
4.1 km from Boot Key Harbor
United States
PAOLA
RM482
RM748 total
includes taxes & fees
26 Oct - 27 Oct
Seascape Resort & Marina
A wooden deck with a pool and chairs overlooking a beach with palm trees.
A beach with a wooden walkway leading to the water, palm trees, and a clear sky.
A pool area with palm trees and a view of the ocean.
A hotel room with a sofa, a desk, a chair, a TV, and a balcony with curtains.

16. Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club
15.6 km from Boot Key Harbor
United States
Tiffany
RM786
RM1,081 total
includes taxes & fees
18 Nov - 19 Nov
Grassy Flats Resort & Beach Club
A wooden dock leading to a row of boats, with a thatched-roof building and palm trees in the background.
A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.
Two bicycles parked on a sandy beach with the ocean in the background.
A bedroom with a bed, two bedside lamps, a glass table, and a view of a balcony with palm trees.

17. Bonefish Bay Motel

Bonefish Bay Motel
8.1 km from Boot Key Harbor
United States
Billy
RM384
RM432 total
includes taxes & fees
29 Oct - 30 Oct
Bonefish Bay Motel
Three colorful drinks on a table with a thatched roof and outdoor seating.
A modern living room with a large sectional sofa, a flat-screen TV, and a view of the sea through large windows.
A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.
A bar area with wicker chairs and a thatched roof, overlooking a body of water with boats.

18. Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys
8.5 km from Boot Key Harbor
United States
Linda
RM532
RM599 total
includes taxes & fees
27 Oct - 28 Oct
Hampton Inn Marathon - Florida Keys
A pool area with lounge chairs and umbrellas, a thatched-roof structure, and a view of the ocean.
A beach with a palm tree, clear blue water, and a bridge in the distance.
A covered outdoor seating area with a view of the ocean, a small table, and two chairs with cushions.
A spacious living area with a view of the ocean, a balcony with a pool, and a staircase leading to another level.

19. Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort
8.3 km from Boot Key Harbor
United States
Judy
RM690
RM951 total
includes taxes & fees
21 Oct - 22 Oct
Glunz Ocean Beach Hotel & Resort
A covered outdoor area with a view of a pool and palm trees.
A swimming pool with yellow lounge chairs, palm trees, and a white building in the background.
A covered patio with a round table and chairs, large windows, and a view of a street and greenery.
A reception desk with a marble countertop, a Toshiba laptop, a vase with white flowers, and a sign indicating an office.

20. Kingsail Resort

Kingsail Resort
3.6 km from Boot Key Harbor
United States
Caroline
RM316
RM355 total
includes taxes & fees
27 Oct - 28 Oct
Kingsail Resort
View all properties

Compare popular hotels close to Boot Key Harbor

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A marina with several docked boats and a row of small, white cabins with blue roofs.
Yacht Haven Marina
9.6
Exceptional
373 reviews
View
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
Isla Bella Beach Resort & Spa
9.2
Wonderful
1,297 reviews
View
A resort with a pool, lounge chairs, and a view of the ocean.
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
9.2
Wonderful
147 reviews
View
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
Captain Pips Marina & Hideaway
9.0
Wonderful
1,003 reviews
View
Two hammocks on a sandy beach with a clear blue sky and turquoise water.
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
9.0
Wonderful
1,005 reviews
View

Hotels recommended for families near Boot Key Harbor

A bar area with a long counter, multiple stools, and a view of the marina with boats.
A cozy seating area with a round table, surrounded by green woven chairs, and a wall adorned with framed photographs.
A gym with kettlebells, medicine balls, and a wooden bench.
A pool area with lounge chairs and umbrellas, surrounded by palm trees and a large tree in the background.

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
Marathon
RM599
RM828 total
includes taxes & fees
9 Nov - 10 Nov
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton
Two hammocks on a sandy beach with a clear blue sky and turquoise water.
A bar area with a view of the ocean, bar stools, umbrellas, and a variety of bottles.
A poolside area with lounge chairs, blue umbrellas, and a fire pit.
An aerial view of a coastal resort with a marina, palm trees, and a large building complex.

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
Marathon
RM584
RM800 total
includes taxes & fees
26 Oct - 27 Oct
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
A beach with white chairs and kayaks, palm trees, and a clear view of the ocean.
A bar area with wooden chairs, a bar counter, and a variety of bottles and glasses.
A beach scene with two white chairs, a hammock, and palm trees.

Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa
Marathon
RM867
RM1,220 total
includes taxes & fees
21 Oct - 22 Oct
Isla Bella Beach Resort & Spa
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
An aerial view of a marina with multiple boats docked, surrounded by a sandy beach and palm trees.
A beach with lounge chairs, palm trees, and a string of lights.
A clear view of a swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a clear sky.

Banana Bay Resort & Marina

Banana Bay Resort & Marina
Marathon
RM517
RM742 total
includes taxes & fees
29 Oct - 30 Oct
Banana Bay Resort & Marina
A resort with a pool, lounge chairs, and a view of the ocean.
A modern kitchen with dark countertops, stainless steel appliances, and wooden cabinets.
A dock with boats, a wooden pier, and a distant shoreline with palm trees.
A deck with tables and chairs, overlooking a calm body of water and palm trees.

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
Marathon
RM731
RM937 total
includes taxes & fees
26 Oct - 27 Oct
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
A waterfront dock with boats and a sunset.
A coastal area with a marina, boats, and a small island with buildings.
A beach with a wooden pier, palm trees, and a clear blue sky.

Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
Marathon
RM400
RM680 total
includes taxes & fees
21 Oct - 22 Oct
Captain Pips Marina & Hideaway
A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.
A buffet setup with various food items and condiments.
A hotel entrance with a covered walkway, palm trees, and a clear blue sky.
A waterfront property with a swimming pool, palm trees, and a white fence.

Skipjack Resort & Marina

Skipjack Resort & Marina
Marathon
RM621
RM864 total
includes taxes & fees
21 Oct - 22 Oct
Skipjack Resort & Marina
A marina with several docked boats and a row of small, white cabins with blue roofs.
A modern kitchen with white cabinetry, a wooden countertop, and a built-in microwave.
A modern kitchen with white cabinets, a microwave, and a dining area with a table and chairs.
A compact bedroom with two beds, a small bathroom, and a view of the outdoors.

Yacht Haven Marina

Yacht Haven Marina
Marathon
RM437
RM1,066 total
includes taxes & fees
21 Oct - 22 Oct
Yacht Haven Marina

Top Boot Key Harbor Hotel Reviews

Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa

10/10 Excellent
"Amazing resort. Room was above expectations, everything was so clean, staff so friendly. Great accommodations & dining options. We will be back!"
Anthony 2-night trip
Posted 3 hours ago
Isla Bella Beach Resort & Spa
Banana Bay Resort & Marina

Banana Bay Resort & Marina

8/10 Good
"This was our first time staying at Banana Bay resort in October 2026. We liked the cleanliness of our room, although the AC was a bit noisy the climate in the room was very comfortable. The front desk staff was super friendly and welcoming. At The Pointe Bar, we were able to experience the most beautiful sunsets, truly remarkable, it would had been more perfect if other options of cocktails were available outside of wine and beer. Additionally, there was No Music playing in the background, it would had been great for the completion of a perfect ambiance, unfortunately this was a miss for me. Breakfast was good, the bagels and pastries are a nice touch, we would had loved to have other options such as fresh fruits like bananas, oranges and apples available. The lighting on the entire property in the evening was a too dark to my liking. The parking lot area at the Island House was dark, we noticed there were no light posts in the vicinity. The entrance doors to the Island House stayed open all evening they did not lock (locks were broken). For safety reasons they should auto lock and access only with the card key readers."
Magnolia 2-night trip
Posted 4 hours ago
Banana Bay Resort & Marina
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

10/10 Excellent
"The room was clean and smelled very good .The air was on when we came in ,so it was a good temperature as well .Staff was friendly and attentive ."
Gretchen 1-night trip
Posted 8 hours ago
Captain Pips Marina & Hideaway
Yacht Haven Marina

Yacht Haven Marina

10/10 Excellent
"It was fantastic!! Loved living on the boat for a few days. Cross off my bucket list. Will do this again."
Michael 2-night trip
Posted 20 hours ago
Yacht Haven Marina
Kingsail Resort

Kingsail Resort

8/10 Good
"Great kayaking opportunity! Free to use and fun areas to explore. The pool area was clean and the water was perfect! Nice sundeck with view of the marina. Professional and friendly front desk staff. This hotel has a very easy-going vibe."
Jane Marie 1-night trip
Posted 23 hours ago
Kingsail Resort
Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort

10/10 Excellent
"All around great hotel. Private pools for adults to enjoy peacefully, a big family pool, a nice beach, excellent Cuban breakfast across the street, and the staff were uniformly helpful and friendly."
Brett 4-night trip
Posted 3 days ago
Tranquility Bay Beachfront Hotel and Resort
Marlin Bay Resort & Marina

Marlin Bay Resort & Marina

10/10 Excellent
"Everything was perfection during our week there. "
Allison 7-night trip
Posted 7 months ago
Marlin Bay Resort & Marina

Other attractions near Boot Key Harbor

A sea turtle swimming underwater.
Photo by Cider Hoff

The Turtle Hospital

9.2/10 (946 reviews)
Explore the campus of The Turtle Hospital as part of your travels around Marathon. Stroll along the area's seaside or simply savour its seafood restaurants.
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A golf course with a curved path, palm trees, and a clear blue sky.

Florida Keys Country Club

8.2/10 (111 reviews)
Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's marina or simply savour its seafood restaurants.
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A beach with clear turquoise water, white sand, and palm trees.

Sombrero Beach

9.0/10 (2,464 reviews)
Play beach games; go swimming, kayaking or snorkeling; and lounge in the sun at one of Marathon’s most visited beaches.
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A sign for Crane Point Hammock with a tree logo and potted plants.

Crane Point Museum and Nature Center

8.6/10 (54 reviews)
You can spend an afternoon exploring the galleries in Crane Point Museum and Nature Center in Marathon. Discover the area's beautiful sunsets or seek out its jogging trails.
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A tall red lighthouse on a pier in the ocean.

Vaca Key

8.8/10 (411 reviews)
Commune with nature and explore the great outdoors at Vaca Key during your travels in Marathon. Stroll along the seaside or discover the area's beautiful sunsets.
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A bridge over turquoise water with a clear sky.

Seven Mile Bridge

9.4/10 (3,266 reviews)
Walk, jog, cycle or drive across one of the longest bridges in North America to take in the scenic ocean views it provides.
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Shady Palm Art Gallery

You can spend time browsing the exhibits at Shady Palm Art Gallery during your trip to Marathon. Stroll along the area's seaside or simply savour its seafood restaurants.
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Marathon Air Museum

You can spend an afternoon browsing the exhibits at Marathon Air Museum during your travels in Marathon.
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Frequently asked questions

What's the area like around Boot Key Harbor?
Boot Key Harbor is located in Marathon. Travellers love the area for its beautiful beaches, top seafood restaurants and dolphin watching opportunities. If you're looking for a convenient place to stay, take a look at the 216 hotels and other accommodation options you'll find within a mile.
Where is the best place to stay near Boot Key Harbor?
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 4 outdoor pools. It's located just a short 0.6 mi (1 km) from Boot Key Harbor. Other good options within a short distance include Tranquility Bay Beachfront Hotel and Resort and Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys.
How many hotels will I find close to Boot Key Harbor?
Expedia has 216 hotels and other accommodation options within a mile from Boot Key Harbor.
If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?
Yes! Most hotel reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of your booking. Add dates, click "Search", then filter by "fully refundable" to review top deals close to Boot Key Harbor.
What can I see and do near Boot Key Harbor?
Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.