
Popular airlines from Ninoy Aquino Intl. Airport (MNL) to Kota Kinabalu Intl. Airport (BKI)
- Scoot
Scoot
- Malaysia Airlines
Malaysia Airlines
- AirAsia Philippines
AirAsia Philippines
- China Southern Airlines
China Southern Airlines
- Singapore Airlines
Singapore Airlines
- Philippine Airlines
Philippine Airlines
- Royal Brunei Airlines
Royal Brunei Airlines
Be in the know
Get alerts if flight prices drop or rise*
Book smarter
Save up to 30% on select hotels after you book a flight*
Cheap Flights from Manila to Kota Kinabalu (MNL-BKI)
Prices were available within the past 7 days and start at RM198 for one-way flights and RM414 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Mon, 2 Feb - Sun, 8 Feb
MNL
Manila
BKI
Kota Kinabalu
RM414 Return, found 4 days ago
RM414
Return
found 4 days ago

Fri, 10 Oct - Sun, 12 Oct
MNL
Manila
BKI
Kota Kinabalu
RM444 Return, found 1 hour ago
RM444
Return
found 1 hour ago

Mon, 10 Nov - Sun, 16 Nov
MNL
Manila
BKI
Kota Kinabalu
RM466 Return, found 3 days ago
RM466
Return
found 3 days ago

Wed, 26 Nov - Sun, 7 Dec
MNL
Manila
BKI
Kota Kinabalu
RM525 Return, found 17 hours ago
RM525
Return
found 17 hours ago

Tue, 2 Jun - Sat, 6 Jun
MNL
Manila
BKI
Kota Kinabalu
RM525 Return, found 3 days ago
RM525
Return
found 3 days ago

Fri, 3 Oct - Mon, 6 Oct
MNL
Manila
BKI
Kota Kinabalu
RM555 Return, found 5 days ago
RM555
Return
found 5 days ago

Mon, 2 Feb - Sun, 8 Feb
MNL
Manila
BKI
Kota Kinabalu
RM736 Return, found 4 days ago
RM736
Return
found 4 days ago

Mon, 2 Feb - Sun, 8 Feb
MNL
Manila
BKI
Kota Kinabalu
RM1,220 Return, found 4 days ago
RM1,220
Return
found 4 days ago

Sat, 4 Oct - Sun, 5 Oct
MNL
Manila
BKI
Kota Kinabalu
RM1,572 Return, found 5 days ago
RM1,572
Return
found 5 days ago

Wed, 26 Nov - Sun, 7 Dec
MNL
Manila
BKI
Kota Kinabalu
RM1,757 Return, found 17 hours ago
RM1,757
Return
found 17 hours ago
Find the cheapest month to fly from Manila (MNL) to Kota Kinabalu (BKI)
September is typically the cheapest month to fly
From RM 291 - RM 1,445 per traveller.
Origin airport | Ninoy Aquino Intl. |
Destination airport | Kota Kinabalu Intl. |
Airlines serving | Malaysia Airlines, Philippine Airlines, Scoot, Singapore Airlines |
Return price | RM414 |
Distance | 1090 km |
Average flight time | 2 hours 10 mins |
Perfect flights from Manila to Kota Kinabalu
Your Journey from Manila to Kota Kinabalu
Start your unforgettable journey with Expedia. Our broad selection of flights from Manila to Kota Kinabalu caters to every travel need. Whether you're yearning for a romantic escape, a solo adventure, or a cultural immersion, we've got you covered.
Choosing Your Ideal Flight
With Expedia, you have access to a wide range of airlines, including Philippines AirAsia, Scoot, Malaysia Airlines, Royal Brunei Airlines, Singapore Airlines, Philippine Airlines. Our selection of flights from Ninoy Aquino Intl. to Kota Kinabalu Intl. caters to every traveler's requirements, ensuring your journey aligns with your schedule. With options from 20 airlines, you're bound to find the perfect flight.
Maximizing Value with Manila to Kota Kinabalu Flights
Experience the joy of finding cheap flights from Ninoy Aquino Intl. to Kota Kinabalu Intl. that fit your budget. Keep an eye out for our special deals and discounts, and check our flexible one-way fares from RM198 and roundtrip prices from RM414*.
Pre-Flight Essentials
Ensure a smooth journey from Manila to Kota Kinabalu with Expedia. From information about check-in times and in-flight amenities to guidance on baggage policies, we provide all the essentials to prepare you for your flight.
Experience the Vibrant Kota Kinabalu
Picture yourself stepping off the plane in Kota Kinabalu and immersing yourself in the unique atmosphere of Kota Kinabalu. From local markets to cultural festivals, each city offers its distinct charm. Make the most of your trip by exploring local attractions and indulging in the local cuisine. With Expedia, explore all this and more, tailored to your budget.
Added Convenience on Your Manila to Kota Kinabalu Flight
Traveling with Expedia is more than just a flight. We offer details about in-flight amenities, baggage policies, and more to ensure a smooth and hassle-free journey. Choose from our variety of airlines and embark on a memorable journey from Manila to Kota Kinabalu.
Beyond the Flight – Exploring Kota Kinabalu
With Expedia, your adventure extends beyond the flight. Explore Kota Kinabalu at your own pace by renting a car or booking a hotel. Discover hidden gems off the beaten path and create unforgettable memories.
Book Your Flight from Manila to Kota Kinabalu with Confidence
Planning your next great adventure is a breeze with Expedia. Our user-friendly platform, unbeatable prices, and round-the-clock customer support make your travel experience seamless and stress-free. Embark on your journey from Manila to Kota Kinabalu with confidence. Book your travel arrangements with Expedia today.
*Note: Prices may vary based on availability and are subject to change.
Frequently asked questions
Explore a world of travel with Expedia
- Trending Routes
- Trending Flights
- Top Flights Destinations
- More Carriers
- Cheap Flights from Other Airports
- Expedia's Latest Trends
Top Routes from Manila
- Manila to Cebu (MNL - CEB)
- Manila to Bacolod (MNL - BCD)
- Manila to Kuala Lumpur (MNL - KUL)
- Manila to Bangkok (MNL - BKK)
- Manila to Bangkok (MNL - DMK)
- Manila to Sapporo (MNL - CTS)
- Manila to Caticlan (MNL - MPH)
- Manila to Hong Kong (MNL - HKG)
- Manila to Denpasar (MNL - DPS)
- Manila to Taipei (MNL - TPE)
- Manila to Iloilo (MNL - ILO)
- Manila to Dumaguete (MNL - DGT)
Top Routes to Kota Kinabalu
- Shanghai to Kota Kinabalu (PVG - BKI)
- Bintulu to Kota Kinabalu (BTU - BKI)
- Kuala Lumpur to Kota Kinabalu (KUL - BKI)
- Johor Bahru to Kota Kinabalu (JHB - BKI)
- Hong Kong to Kota Kinabalu (HKG - BKI)
- Jakarta to Kota Kinabalu (CGK - BKI)
- Taipei to Kota Kinabalu (TPE - BKI)
- Sibu to Kota Kinabalu (SBW - BKI)
- Miri to Kota Kinabalu (MYY - BKI)
- Kuching to Kota Kinabalu (KCH - BKI)
- Guangzhou to Kota Kinabalu (CAN - BKI)
- Tawau to Kota Kinabalu (TWU - BKI)
Top Routes from Manila
Top Flight Destinations
- Flights to Kuala Lumpur
- Flights to Iskandar Puteri
- Flights to George Town
- Flights to Langkawi
- Flights to Johor Bahru
- Flights to Kota Kinabalu
- Flights to Malacca City
- Flights to Ipoh
- Flights to Sepang
- Flights to Miri
- Flights to Genting Highlands
- Flights to Kuching
- Flights to Port Dickson
- Flights to Kuantan
- Flights to Bandar Penawar
- Flights to Pulau Perhentian Besar
- Flights to Tioman Island
- Flights to Redang Island
- Flights to Pulau Perhentian Kecil
- Flights to Kuala Terengganu
Expedia's Latest Trends
Flights
- Flights from Sepang (KUL) to Semporna (SMM)
- Flights from Kuala Lumpur (SZB) to Tawau (TWU)
- Flights from Tawau (TWU) to Sandakan (SDK)
- Flights from Sepang (KUL) to Kudat (KUD)
- Flights from Sandakan (SDK) to Kuala Lumpur (SZB)
- Flights from Sandakan (SDK) to Kota Kinabalu (BKI)
- Flights from Kota Kinabalu (BKI) to Tawau (TWU)
- Flights from George Town (PEN) to Tawau (TWU)
- Flights from Kota Kinabalu (BKI) to Sandakan (SDK)
- Flights from Senai (JHB) to Tawau (TWU)
- Flights from George Town (PEN) to Semporna (SMM)
- Flights from Tawau (TWU) to Sepang (KUL)
- Flights from Kota Kinabalu (BKI) to Kudat (KUD)
- Flights from Tawau (TWU) to Kota Kinabalu (BKI)
- Flights from Sandakan (SDK) to Tawau (TWU)
- Flights from Senai (JHB) to Semporna (SMM)
- Flights from Kuching (KCH) to Tawau (TWU)
- Flights from Sepang (KUL) to Sandakan (SDK)
- Flights from George Town (PEN) to Sandakan (SDK)
- Flights from Guangzhou (CAN) to Tawau (TWU)
- Flights from Kuching (KCH) to Semporna (SMM)
- Flights from Tawau (TWU) to Tarakan (TRK)
- Flights from Lahad Datu (LDU) to Kota Kinabalu (BKI)
- Flights from Sepang (KUL) to Tawau (TWU)
- Flights from Kota Kinabalu (BKI) to Semporna (SMM)
- Flights from Kota Kinabalu (BKI) to Keningau (KGU)
- Flights from Miri (MYY) to Tawau (TWU)
- Flights from Sepang (KUL) to Lahad Datu (LDU)
- Flights from Kota Kinabalu (BKI) to Lahad Datu (LDU)
- Flights from Sandakan (SDK) to Sepang (KUL)
*Available to Expedia members.