Hotels near Shelter Island

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Check prices for these dates

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25 Apr - 26 Apr
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26 Apr - 27 Apr
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1 May - 3 May
In two weeks
8 May - 10 May

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Our top choices for Shelter Island hotels

Exterior

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
10.0 out of 10, Exceptional, (5 reviews)
"I had an amazing stay at LYFE San Diego! The views are absolutely incredible—whether it’s sunrise or sunset, you’re getting a picture-perfect experience right from the property. The recent renovation really stands out; everything feels fresh, modern, and thoughtfully designed with great attention to detail. The rooms are clean, stylish, and super comfortable, and the overall vibe of the hotel is both relaxing and elevated. You can tell a lot of effort went into creating a space that feels both...
United States
Armaan
The price is RM425
RM479 total
includes taxes & fees
27 Apr - 28 Apr
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
Exterior

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,555 reviews)
"Great stay!"
United States
ANAT
The price is RM532
RM612 total
includes taxes & fees
27 Apr - 28 Apr
Bay Club Hotel & Marina
Exterior

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,587 reviews)
"A wonderful location and stay."
United States
Margaret
The price is RM553
RM635 total
includes taxes & fees
12 May - 13 May
Best Western Plus Island Palms Hotel & Marina
Property grounds

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,934 reviews)
"Amazing place to stay! Great pool and hot tub with bar nearby. Very friendly staff as well. Will definitely stay here again!"
United States
Ryan
The price is RM710
RM895 total
includes taxes & fees
11 May - 12 May
Humphreys Half Moon Inn
Exterior

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,460 reviews)
"Wonderful stay. Great breakfast, clean rooms and attentive staff"
United States
Joseph
The price is RM745
RM856 total
includes taxes & fees
11 May - 12 May
Homewood Suites by Hilton San Diego Airport/Liberty Station
Lobby

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,702 reviews)
"Great location, clean room plus friendly staffes."
United States
Alfred
The price is RM671
RM771 total
includes taxes & fees
3 May - 4 May
Hampton Inn & Suites San Diego Airport Liberty Station
Courtyard view

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,302 reviews)
"Great hotel"
United States
Amy
The price is RM702
RM807 total
includes taxes & fees
3 May - 4 May
Courtyard by Marriott San Diego Airport/Liberty Station
Lobby

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,001 reviews)
"Excellent place to stay."
United States
Rosario
The price is RM671
RM771 total
includes taxes & fees
3 May - 4 May
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Terrace/patio

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,188 reviews)
"Very nice place, I will come again!"
United States
kenneth
The price is RM615
RM706 total
includes taxes & fees
10 May - 11 May
Hilton San Diego Airport/Harbor Island
Gift shop

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,001 reviews)
"Clean room, felt safe, next to the harbor."
United States
Michael
The price is RM471
RM531 total
includes taxes & fees
28 Apr - 29 Apr
Sea Harbor Hotel
View from room

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (729 reviews)
"Great property and location "
United States
JOSE
The price is RM582
RM669 total
includes taxes & fees
3 May - 4 May
The Monsaraz San Diego, Tapestry Collection by Hilton
Bar (on property)

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,014 reviews)
"Clean rooms, super friendly staff!"
United States
Melinda
The price is RM582
RM669 total
includes taxes & fees
3 May - 4 May
DoubleTree by Hilton San Diego Bayside
Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (1,839 reviews)
"Great stay"
United States
Jason
The price is RM504
RM578 total
includes taxes & fees
4 May - 5 May
Best Western Yacht Harbor Hotel
Water view

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,001 reviews)
"We came for the first time on our honeymoon and 10 years later we came back and it was just as incredible as the first time. Perfect location, gorgeous views, the staff is amazing. Love all yhe amenities from the pool, the spa, and thr fire pits, all of it. Our room was a tad dated but nothing to fuss over. Got hit with resort and parking fees but thats to be expected so budget accordingly. Otherwise its an incredible experience staying here. You're less than 20 minutes away from all SD...
United States
Anthony K
The price is RM829
RM1,190 total
includes taxes & fees
17 May - 18 May
Kona Kai San Diego
Exterior

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,462 reviews)
"It was a great stay!"
United States
Riley
The price is RM465
RM525 total
includes taxes & fees
11 May - 12 May
Comfort Inn San Diego Airport At The Harbor
Beach/ocean view

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,003 reviews)
"The room was great. Hotel was great and surrounding area was great. Recommend for affordable stay."
United States
Isaiah
The price is RM460
RM528 total
includes taxes & fees
26 Apr - 27 Apr
Ramada by Wyndham San Diego Airport
Blackout curtains, iron/ironing board, free WiFi, bed sheets

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (408 reviews)
"Great price for the area. Friendly helpful staff. "
United States
Susan
The price is RM336
RM378 total
includes taxes & fees
26 Apr - 27 Apr
Hotel Point Loma
Exterior detail

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,001 reviews)
"A small but adequate room."
United States
Joseph
The price is RM285
RM321 total
includes taxes & fees
27 Apr - 28 Apr
Hotel Aqua Mar
Lobby sitting area

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (478 reviews)
"Excellent stay, clean and nice people!"
United States
Christine
The price is RM257
RM290 total
includes taxes & fees
28 Apr - 29 Apr
Samesun Ocean Beach - Hostel
Property grounds

The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,001 reviews)
"The location was beautiful. The sunsets stunning and the staff beyond friendly and helpful."
United States
George
The price is RM855
RM964 total
includes taxes & fees
26 Apr - 27 Apr
The Inn at Sunset Cliffs
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
10.0
Exceptional
5 reviews
View
Exterior
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,555 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,587 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
2,934 reviews
View
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,460 reviews
View

Top Shelter Island Hotel Reviews

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent
"We love staying here! It's quiet and clean. It's a great place to relax. Oh, you do have to like airplanes (which we do). All of the staff is friendly and so helpful. I do suggest that the girl in the kitchen with green hair smiles a little more. Everyone else looks so happy and friendly. BTW-the free breakfast is excellent. Great coffee too!"
Diane 2-night trip
Posted 2 hours ago
Homewood Suites by Hilton San Diego Airport/Liberty Station

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties

Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 37 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 37 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Point Loma Lighthouse, Hotel del Coronado and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.