Top 10 Hotels Near Shelter Island in San Diego for 2026

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Alicia

RM747

RM859 total

includes taxes & fees

10 Nov - 11 Nov

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A modern lobby with a reception desk, seating area, and a large screen.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

2. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Jaycie Nicole

RM760

RM873 total

includes taxes & fees

8 Nov - 9 Nov

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

3. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

MANUEL

RM613

RM705 total

includes taxes & fees

22 Nov - 23 Nov

A resort with two-story buildings, balconies, and a pool area.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

A canal lined with palm trees and a row of buildings with balconies.

4. Humphreys Half Moon Inn

1 km from Shelter Island

Svenja

RM650

RM828 total

includes taxes & fees

22 Nov - 23 Nov

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Julie

RM514

RM591 total

includes taxes & fees

22 Nov - 23 Nov

A marina with boats docked, a balcony with chairs, and a view of the water.

A hotel room with a balcony, a sofa, a bed, a desk, and a TV.

A marina with numerous boats, a Hilton hotel, and a view of the surrounding cityscape.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

6. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

RM666

RM766 total

includes taxes & fees

15 Nov - 16 Nov

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A modern interior with a stone wall, leather sofa, and pendant lighting.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

7. The Pearl Hotel

1.6 km from Shelter Island

Jane

RM641

RM724 total

includes taxes & fees

2 Nov - 3 Nov

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

A modern aquarium with a celestial-themed backdrop.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

RM695

RM799 total

includes taxes & fees

22 Nov - 23 Nov

A square pizza on a wooden board with a fire pit in the background.

A hotel with a well-maintained lawn, palm trees, and a pool area.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

9. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

RM566

RM651 total

includes taxes & fees

22 Nov - 23 Nov

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

10. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Elizabeth

RM466

RM534 total

includes taxes & fees

8 Nov - 9 Nov

A marina with boats, a yacht, and a balcony with two chairs and a table.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

11. Kona Kai San Diego

0.3 km from Shelter Island

Michael

RM813

RM1,180 total

includes taxes & fees

1 Nov - 2 Nov

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

12. Sea Harbor Hotel

1.4 km from Shelter Island

Roxanne

RM426

RM481 total

includes taxes & fees

10 Nov - 11 Nov

A modern building with a curved facade and a sign that reads "MONSARAZ."

An outdoor patio area with seating arrangements, a fire feature, and ambient lighting.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Deborah

RM633

RM728 total

includes taxes & fees

22 Nov - 23 Nov

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

A multi-level interior with a staircase, black railings, and hanging lights.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

RM437

RM493 total

includes taxes & fees

19 Nov - 20 Nov

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A rooftop patio with wicker furniture and palm trees, overlooking a marina.

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

15. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Sean

RM382

RM431 total

includes taxes & fees

17 Nov - 18 Nov

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A reception area with a wooden reception desk, a computer, and a chair.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

16. Hotel Point Loma

1.5 km from Shelter Island

Clint

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

17. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

RM421

RM484 total

includes taxes & fees

26 Oct - 27 Oct

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

A modern reception area with a wooden bench and a green hedge.

A hotel room with two beds, a blue wall, a beach-themed artwork, and a window with curtains.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

18. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

RM346

RM390 total

includes taxes & fees

25 Oct - 26 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

19. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

RM224

RM253 total

includes taxes & fees

1 Nov - 2 Nov

A couple walking hand in hand on a sandy beach with the ocean in the background.

A pathway flanked by lush tropical plants and a building with a large archway.

A hotel entrance with a covered patio, outdoor seating, and large flower planters.

A narrow pathway flanked by buildings with large windows and a well-maintained garden.

20. 1906 Lodge

5.9 km from Shelter Island

Judith

RM1,099

RM1,211 total

includes taxes & fees

1 Nov - 2 Nov

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,701 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,243 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,741 reviews	View
Humphreys Half Moon Inn	9.2 Wonderful 3,150 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,621 reviews	View

Top Shelter Island Hotel Reviews

Wyndham San Diego Bayside

10/10 Excellent

"Centrally located"

Sea Harbor Hotel

10/10 Excellent

"The property was a great place to stay. The establishment is a little on the older side, so expect to hear a little bit of noise from the outside and the neighbors. Either way, it was a great place to stay just for a night."

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"Second time staying here! Clean, comfortable and convenient location!"

Best Western Yacht Harbor Hotel

10/10 Excellent

"Convenient to airport and some good restaurants in Marina area! Easy to get to other attractions. Staff is great, and breakfast included."

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"Very pleasant stay."

The Pearl Hotel

8/10 Good

"Nice"

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

Hotels near Shelter Island

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Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Courtyard by Marriott San Diego Airport/Liberty Station

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Humphreys Half Moon Inn

5. Best Western Plus Island Palms Hotel & Marina

6. Hilton San Diego Airport/Harbor Island

7. The Pearl Hotel

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

9. DoubleTree by Hilton San Diego Bayside

10. Best Western Yacht Harbor Hotel

11. Kona Kai San Diego

12. Sea Harbor Hotel

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

15. Comfort Inn San Diego Airport At The Harbor

16. Hotel Point Loma

17. Ramada by Wyndham San Diego Airport

18. Hotel Aqua Mar

19. Samesun Ocean Beach - Hostel

20. 1906 Lodge

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Wyndham San Diego Bayside

Sea Harbor Hotel

Best Western Plus Island Palms Hotel & Marina

Best Western Yacht Harbor Hotel

Homewood Suites by Hilton San Diego Airport/Liberty Station

The Pearl Hotel

Other attractions near Shelter Island

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions