A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

San Juan Island Budget Hotels from RM439

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Island Budget Hotels

Tonight
16 Sept - 17 Sept
Tomorrow
17 Sept - 18 Sept
This weekend
18 Sept - 20 Sept
Next weekend
25 Sept - 27 Sept

Our top choices for San Juan Island cheap hotels

A motel with a row of rooms, a parking lot, and blooming flowers in the foreground.
A hallway with an exit sign, a statue, and a Starbucks sign on the wall.
A room with two beds, wooden walls, and a window.
A wooden chair and a wooden dresser in a room with a wooden panel wall.

1. The Orca Inn

The Orca Inn
Friday Harbor
United States
Andrew
RM397
RM439 total
includes taxes & fees
1 Oct - 2 Oct
The Orca Inn
A modern interior with sofas, a table, and hanging plants.
A living room with a stone fireplace, a large window, a dark gray sofa, and a wooden coffee table.
A covered outdoor swimming pool area with a hot tub, benches, and emergency exit signs.
A modern lobby with a reception desk, seating area, and a large window with a view of the sea.

2. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Jennifer
RM776
RM859 total
includes taxes & fees
4 Oct - 5 Oct
Friday Harbor Suites
A building with a covered outdoor area, red doors, and hanging flower baskets.
A hotel room with two beds, a nightstand with a lamp, a vase with flowers, and a window with curtains.
A pool area with a wooden deck, surrounded by trees with pinkish leaves.
A hotel room with a grey armchair, a small round table, a bedside table, a lamp, and a potted plant.

3. Discovery Inn

Discovery Inn
Friday Harbor
United States
Victoria
RM695
RM769 total
includes taxes & fees
4 Oct - 5 Oct
Discovery Inn
A marina with boats, a cruise ship, and a forested island.
A hotel room with a bed, a TV, a painting, a wooden dresser, and a desk with a lamp.
A living room with a sectional sofa, a coffee table, a lamp, and a potted plant.
A kitchen with wooden cabinets, a built-in microwave, and a coffee station.

4. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
RM654
RM723 total
includes taxes & fees
1 Oct - 2 Oct
Bird Rock Hotel
A living room with a sofa, armchairs, a coffee table, and a fireplace.
A waterfront promenade with benches, a gazebo, and a large white boat docked at a pier.
A landscaped garden with neatly trimmed hedges, a white picket fence, and a wooden signboard.
A hotel lobby with a reception desk, seating area, and a view of the adjacent room.

5. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Nicole
RM940
RM1,040 total
includes taxes & fees
1 Oct - 2 Oct
Earthbox Inn & Spa
A serene outdoor seating area with a table and chairs, surrounded by lush greenery and a tree.
A grassy area with a pond, trees, and a red chair.
A spacious entryway with a wooden staircase, a patterned rug, and potted plants.
A two-story building with a red door, surrounded by a garden with various plants and flowers.

6. Trumpeter Inn

Trumpeter Inn
Friday Harbor
United States
James
RM937
RM1,034 total
includes taxes & fees
1 Oct - 2 Oct
Trumpeter Inn
A two-story house with a front porch, a picket fence, and a small garden area.
A garden with a wooden pergola, flowering plants, and a pathway leading to a house.
A cozy room with a wooden ceiling, a bed with a quilt, a sofa with cushions, a table with a board game, and a window with shutters.
A balcony with a hot tub, two chairs, and a table set with plates, glasses, and a bottle.

7. Tucker House Inn

Tucker House Inn
Friday Harbor
United States
ZACHARY
RM643
RM711 total
includes taxes & fees
12 Oct - 13 Oct
Tucker House Inn
A marina with boats docked in a structured layout, surrounded by water and a distant cityscape.
A restaurant with tables set for dining, large windows offering a view of boats and greenery.
A waterfront hotel with multiple docked boats, a pier, and a view of the surrounding forested area.
A serene lakeside setting with string lights, wicker chairs, and a fire pit area.

8. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
RM875
RM1,014 total
includes taxes & fees
12 Oct - 13 Oct
Roche Harbor Resort
A wooden cabin interior with a dining table, chairs, and a bench.
A cozy cabin interior with a large window overlooking a lake, a fireplace, and a comfortable seating area.
A marina with boats docked, surrounded by forested hills and a small building complex.
A lodge with multiple cabins, a dock, and a surrounding forest.

9. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Patricia
RM1,222
RM1,348 total
includes taxes & fees
8 Oct - 9 Oct
Snug Harbor Resort
A room with a sloped ceiling and large windows offering a view of a rural landscape.
A farm with rows of crops under a partly cloudy sky.
A table with various food items, including a dish with green beans, eggs, and a bowl of sauce.
An outdoor event with people seated at tables under string lights and paper lanterns.

10. Saturn's Return

Saturn's Return
Friday Harbor
United States
Margaret
RM1,386
RM1,530 total
includes taxes & fees
6 Oct - 7 Oct
Saturn's Return
View all properties

Top San Juan Island Hotel Reviews

The Marina Inn

The Marina Inn

10/10 Excellent
"The hosts were especially helpful in giving us info about where to eat and shop. They let us check in early since a room was available so we could rest before catching an early ferry the next morning. And they offered fresh baked chocolate chip cookies."
Robert 1-night trip
Posted 12 hours ago
The Marina Inn

Explore a world of travel with Expedia