𝗧𝗢𝗣 𝗛𝗼𝘁𝗲𝗹𝘀 𝗶𝗻 Nissequogue from RM349 (2026) - Fully Refundable Options

A calm river reflecting the sunset sky, surrounded by grassy marshland and distant trees.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Nissequogue

Pet friendly

Apartment

Pool

Condo

Hot tub

Family friendly

Waterpark

Spa

Check prices for these dates

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Nissequogue hotels

A hotel with a parking lot, a large building with multiple floors, and a forested area in the background.

A spacious lobby with a reception desk, seating area, and decorative lighting.

A modern bar area with a long counter, bar stools, and a variety of bottles and glasses.

A patio area with red Adirondack chairs, blue umbrellas, and a brick building in the background.

1. Hilton Garden Inn Stony Brook

Stony Brook

Kimberly

RM585

RM669 total

includes taxes & fees

22 Oct - 23 Oct

A large indoor swimming pool with a tiled floor, lounge chairs, and a lifeguard stand.

A modern hotel lobby with a central coffee bar, seating areas, and a flat-screen TV mounted on the wall.

A modern hotel room with a large bed, a wooden headboard, a built-in bathtub, and a flat-screen TV.

2. Holiday Inn Express Stony Brook by IHG

Centereach

Patricia

RM481

RM550 total

includes taxes & fees

26 Oct - 27 Oct

A group of people toasting with wine glasses at a table.

A hotel room with a bed, desk, chair, sofa, and a TV.

A hotel room with a bed, a sofa, a dining table with chairs, a TV, and a fireplace.

3. Residence Inn By Marriott Long Island Hauppauge

Hauppauge

Debra

RM619

RM722 total

includes taxes & fees

4 Oct - 5 Oct

An indoor swimming pool with clear glass walls, a tiled floor, and a few chairs near the windows.

A hotel room with a large bed, a desk with a computer, a flat-screen TV, and a window with a view of greenery.

A modern hotel lobby with a 'welcome' sign, comfortable seating areas, and a flat-screen TV mounted on the wall.

A modern office space with a large flat-screen TV, a desk with a chair, a microwave, and a small plant.

4. Hampton Inn Long Island/Islandia

Islandia

CATHERINE

RM532

RM608 total

includes taxes & fees

7 Oct - 8 Oct

An indoor swimming pool with sunlit areas, lounge chairs, and potted plants.

A spacious lobby with a modern design, featuring a mix of seating areas, a reception desk, and large windows offering views.

A reception area with a dark wood reception desk, two laptops, a vase with white flowers, and a glass table.

A hallway with a high ceiling, large windows, and a patterned carpet.

5. Hyatt Regency Long Island

Hauppauge

Leonardo

RM585

RM669 total

includes taxes & fees

5 Oct - 6 Oct

A couple in white bathrobes holding champagne glasses in a hotel room with a large window and a door in the background.

A spacious atrium with high ceilings, a glass ceiling, and multiple levels of balconies.

A bar area with a hexagonal shelving unit displaying bottles, a flat-screen TV, and bar stools.

A spacious lobby with a high ceiling, a glass atrium, and a staircase leading to upper floors.

6. Jake's 58 Casino Hotel - Adult Only

Islandia

WILLIAM

RM305

RM349 total

includes taxes & fees

28 Sept - 29 Sept

An indoor swimming pool with clear blue water, surrounded by lounge chairs and tables.

A modern kitchen with a central island, glass display case, and dark wood cabinets.

A hotel entrance with a flag, a covered walkway, and a sign for Homewood Suites Hilton.

A modern office space with a desk, computer, and chair.

7. Homewood Suites by Hilton Ronkonkoma

Ronkonkoma

Lisa

RM648

RM740 total

includes taxes & fees

4 Oct - 5 Oct

An outdoor patio area with a stone fire pit surrounded by sofas and chairs, string lights overhead, and a view of a multi-story building in the background.

A spacious lobby with a stone pillar, a flat-screen TV, comfortable seating, and large windows offering a view of the outdoors.

A hotel room with two beds, a large mirror, a TV, and a desk.

8. Residence Inn Long Island Islip/Courthouse Complex

Central Islip

Meghan

RM605

RM692 total

includes taxes & fees

30 Sept - 1 Oct

A large, multi-story hotel with a prominent tower and a covered entrance.

A spacious lobby with a reception desk, seating area, and a large window providing natural light.

A bar area with a long counter, bar stools, a menu board, and a variety of bottles and glasses.

A modern hotel lobby with a sectional sofa, dining area, and a bar.

9. Courtyard by Marriott Long Island MacArthur Airport

Ronkonkoma

MD Ekrim

RM648

RM740 total

includes taxes & fees

4 Oct - 5 Oct

A café named 'CAFE PRONTO' with a counter and seating area.

A boat on a sandy beach with a lifeguard tower in the background.

A spacious lobby with a checkered floor, red and beige seating areas, a bar with a counter, and a conference room with red chairs and a desk.

A spacious restaurant with multiple dining areas, wooden furniture, and a high ceiling with exposed beams.

10. Radisson Hotel Hauppauge-Long Island

Hauppauge

Demetra

RM551

RM629 total

includes taxes & fees

4 Oct - 5 Oct

A spacious living room with a fireplace, large windows, and a modern chandelier.

An outdoor patio area with brick flooring, round tables, chairs, and large umbrellas.

A spacious lobby with a central fireplace, a bar area, and a seating area with tables and chairs.

A modern kitchen with a bar area, marble countertops, and dark wooden cabinets.

11. Hilton Garden Inn Islip/MacArthur Airport

Ronkonkoma

Elizabeth

RM483

RM552 total

includes taxes & fees

12 Oct - 13 Oct

A modern building entrance with a bench, potted plants, and a blue mat leading to a reception area.

A modern office space with a long desk, two chairs, and a large window providing natural light.

A spacious lobby with a reception desk, seating area, and a staircase leading to upper floors.

A modern hotel room with a blue sofa, a wooden desk, a chair, a lamp, and a television.

12. Holiday Inn Express Hauppauge-Long Island

Hauppauge

emmanuel

RM574

RM656 total

includes taxes & fees

26 Oct - 27 Oct

A well-organized snack and beverage section with shelves stocked with various products, a refrigerated display, and a small table with snacks.

A modern office space with two desks, each with a computer monitor, keyboard, and a vase of flowers.

A banquet hall with round tables set for a formal event, featuring white tablecloths, gold accents, and floral centerpieces.

A modern reception area with a wooden desk, two computer monitors, a sofa, and a decorative shelf with various items.

13. Holiday Inn Long Island-Islip Arpt East by IHG

Holtsville

Shalonda

RM481

RM549 total

includes taxes & fees

13 Oct - 14 Oct

A modern kitchen with a breakfast bar, waffle station, and various food items displayed.

A hotel room with a bed, a desk with a flat-screen TV, a chair, a large window with curtains, and a wall-mounted mirror.

A hotel room with a desk, chair, television, and a small table with a lamp.

An indoor swimming pool with clear depth markers, a lifeguard chair, and a seating area with tables and chairs.

14. Hampton Inn Long Island / Commack

Commack

Daniel

RM633

RM724 total

includes taxes & fees

5 Oct - 6 Oct

A hotel with a prominent sign, a covered entrance, and a car parked in front.

A hotel reception area with a wooden reception desk, a framed artwork above the counter, and a potted plant on the counter.

A spacious restaurant with multiple dining tables and chairs, a kitchen area, and a large window.

A hotel lobby with a reception desk, seating area with armchairs and sofas, patterned carpet, and ambient lighting.

15. La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

Bohemia

darrell

RM381

RM436 total

includes taxes & fees

22 Oct - 23 Oct

A covered wooden deck with white railings, blue doors, and hanging flower arrangements.

A living room with a patterned sofa set, a glass coffee table, and a decorative chandelier.

A wooden dock with wicker chairs and a blue umbrella, overlooking a marina with boats and palm trees.

A marina with boats docked, a pier with blue umbrellas and white chairs, and a flagpole with flags.

16. Danfords Hotel and Marina

Port Jefferson

Martin

RM620

RM866 total

includes taxes & fees

7 Oct - 8 Oct

A modern kitchen with white brick backsplash, wooden cabinets, and a central island with appliances. There are two dining areas with tables and chairs.

A swimming pool with a lifeguard chair, lounge chairs, and a window with a view of greenery.

A spacious hotel lobby with a modern design, featuring a leather sofa, a wooden chair, and a dining area with a large table and chairs.

A hotel room with two beds, a desk, a chair, a TV, and a window with curtains.

17. Fairfield Inn by Marriott Medford Long Island

Medford

Carl

RM491

RM561 total

includes taxes & fees

6 Oct - 7 Oct

A swimming pool with a tiled deck, surrounded by windows and chairs.

A compact kitchen with wooden cabinets, a stainless steel refrigerator, a microwave, and a coffee maker.

An outdoor patio with a grill, dining table, chairs, and a basketball hoop.

A modern kitchen with grey cabinets, a black countertop, and a wooden floor.

18. Residence Inn by Marriott Long Island Holtsville

Holtsville

Markenson

RM551

RM629 total

includes taxes & fees

30 Sept - 1 Oct

An outdoor bar area with seating and a fire feature, surrounded by a building with multiple floors and large windows.

A swimming pool with clear blue water, surrounded by orange chairs and a lifeguard station.

A Courtyard Marriott hotel with a covered outdoor seating area, a clear entrance, and a parking lot.

A modern lounge area with seating arrangements, a bar, and a large window providing natural light.

19. Courtyard by Marriott Long Island Islip/Courthouse Complex

Central Islip

James

RM587

RM670 total

includes taxes & fees

5 Oct - 6 Oct

An outdoor patio with brick walls, wicker furniture, and a covered seating area.

A kitchen with wooden cabinets, a microwave, a stove, and a refrigerator. There are four chairs around a central island.

A swimming pool with lounge chairs and a covered area, surrounded by a brick building and trees.

A cozy living room with a sofa, armchair, and a small round table. There are two lamps on either side of the sofa.

20. Chalet Inn & Suites Centerport

Centerport

Christopher

RM545

RM623 total

includes taxes & fees

18 Oct - 19 Oct

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Nissequogue attractions

Short Beach

Why not spend a lazy afternoon at Short Beach during your trip to Nissequogue?

See properties

Learn more about Nissequogue

Head to sights like Nissequogue River and Short Beach as you discover Nissequogue.

See all hotels in Nissequogue

Top Nissequogue Hotel Reviews

Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport

8/10 Good

"I truly enjoyed my stay. The hotel was a beautiful older building with a lot of character and a nostalgic vibe."

Amsterdam Hotel

8/10 Good

"Clean, comfortable room, easy to navigate the a/c and heat controls. No shower, but a bathtub Mattress was very hard, Not comfortable Not a lot of choices for breakfast, but adequate"

Holiday Inn Express Hauppauge-Long Island

10/10 Excellent

"Was a very comfortable stay, kind and pleasant staff. The complementary continental breakfast could use a bit of flavour and variety though."

Norwalk Inn & Conference Center

10/10 Excellent

"Our room, the public areas and the exterior are clean and well maintained. The staff us friendly, helpful and professional. This was our second stay related to my eye surgery so sadly I was confined to bed for the stay but everything went well with the surgery and the stay. We were able to enjoy a very nice dinner at Adam's Rib pn our first night. Generous portions and very good service."

Hyatt Place Milford / New Haven

10/10 Excellent

"Nice clean room"

Motel 6 Milford, CT

10/10 Excellent

"I was pleasantly surprised by how clean the room was during my stay. I will certainly recommend this property to others and look forward to returning in the future."

The Circle Hotel Fairfield

10/10 Excellent

"Clean room breakfast good service"

Danfords Hotel and Marina

10/10 Excellent

"Rooms are spotless Bar and food amazing along with staff"

More cheap stays in Nissequogue

Motel 6 Milford, CT

111 Schoolhouse Road Milford CT

RM306

RM351 total

8 Oct - 9 Oct

includes taxes & fees

6.6/10 (1,050 reviews)

Red Carpet Inn

1209 E Main St Stamford CT

RM396

RM455 total

28 Sept - 29 Sept

includes taxes & fees

7.2/10 Good! (1,013 reviews)

Amsterdam Hotel

19 Clarks Hill Ave Stamford CT

RM429

RM493 total

8 Oct - 9 Oct

includes taxes & fees

8.4/10 Very good! (1,791 reviews)

East Norwich Inn

6321 Northern Blvd. East Norwich NY

RM457

RM525 total

29 Sept - 30 Sept

includes taxes & fees

Holiday Inn Express Stony Brook by IHG

3131 Nesconset Hwy Centereach NY

RM481

RM550 total

26 Oct - 27 Oct

includes taxes & fees

Holiday Inn Express Hauppauge-Long Island

2050 Express Dr S Hauppauge NY

RM574

RM656 total

26 Oct - 27 Oct

includes taxes & fees

8.4/10 Very good! (1,598 reviews)

Frequently asked questions

Where is the best place for a stay in Nissequogue?

Radisson Hotel Hauppauge-Long Island, located 7.6 mi (12.2 km) from the heart of Nissequogue, is a top choice for your stay, based on our traveller data. Two other options for your stay in the area are Amsterdam Hotel and La Quinta Inn & Suites by Wyndham Stamford / New York City. See all available top hotels, or vacation rentals in Nissequogue.

If I need to cancel my hotel reservation in Nissequogue, will I receive a refund?

Yes! You'll find that most hotel room reservations are fully refundable if you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you may still be able to cancel and receive a refund within a 24-hour period of your booking. Filter your search by fully refundable to find flexible hotel deals in Nissequogue.

What is staying in Nissequogue like?

Visitors will definitely enjoy all that Nissequogue has to offer. There are 1601 hotels and other accommodation options in the surrounding area. Find out more about Nissequogue.

What should I do while I'm visiting Nissequogue?

A couple of favourite places to visit are Nissequogue River and Short Beach. You'll also find Avalon Park and Preserve and Sunken Meadow State Park in the area. Take a look at what more there is to see and do in Expedia's Nissequogue guide.

What's the weather like in Nissequogue?

The hottest months are usually July and August, with an average temperature of 22°C, while the coldest months are January and February, with an average of 3°C. Average annual precipitation for Nissequogue is 1431 mm.

Nissequogue hotels from RM349

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Nissequogue

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Nissequogue hotels

1. Hilton Garden Inn Stony Brook

2. Holiday Inn Express Stony Brook by IHG

3. Residence Inn By Marriott Long Island Hauppauge

4. Hampton Inn Long Island/Islandia

5. Hyatt Regency Long Island

6. Jake's 58 Casino Hotel - Adult Only

7. Homewood Suites by Hilton Ronkonkoma

8. Residence Inn Long Island Islip/Courthouse Complex

9. Courtyard by Marriott Long Island MacArthur Airport

10. Radisson Hotel Hauppauge-Long Island

11. Hilton Garden Inn Islip/MacArthur Airport

12. Holiday Inn Express Hauppauge-Long Island

13. Holiday Inn Long Island-Islip Arpt East by IHG

14. Hampton Inn Long Island / Commack

15. La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

16. Danfords Hotel and Marina

17. Fairfield Inn by Marriott Medford Long Island

18. Residence Inn by Marriott Long Island Holtsville

19. Courtyard by Marriott Long Island Islip/Courthouse Complex

20. Chalet Inn & Suites Centerport

Stay near popular Nissequogue attractions

Short Beach

Learn more about Nissequogue

Top Nissequogue Hotel Reviews

Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport

Amsterdam Hotel

Holiday Inn Express Hauppauge-Long Island

Norwalk Inn & Conference Center

Hyatt Place Milford / New Haven

Motel 6 Milford, CT

The Circle Hotel Fairfield

Danfords Hotel and Marina

More cheap stays in Nissequogue

Motel 6 Milford, CT

Red Carpet Inn

Amsterdam Hotel

East Norwich Inn

Holiday Inn Express Stony Brook by IHG

Holiday Inn Express Hauppauge-Long Island

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app