A sunny beach with people sunbathing and swimming, palm trees, and buildings in the background.

Hotels near Mission Bay

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Check prices for these dates

Tonight
4 Sept - 5 Sept
Tomorrow
5 Sept - 6 Sept
This weekend
4 Sept - 6 Sept
Next weekend
11 Sept - 13 Sept

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Our top choices for Mission Bay hotels

1. The Wayfarer San Diego

The Wayfarer San Diego
Mission Beach, 3 km from Mission Bay
United States
Nicholas
RM1,044
RM1,200 total
includes taxes & fees
22 Sept - 23 Sept
The Wayfarer San Diego

2. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.2 km from Mission Bay
United States
Joshua
RM527
RM606 total
includes taxes & fees
10 Sept - 11 Sept
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

3. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 km from Mission Bay
Canada
nishant
RM546
RM627 total
includes taxes & fees
8 Sept - 9 Sept
Holiday Inn Express San Diego - SeaWorld Area by IHG

4. Paradise Point Resort & Spa

Paradise Point Resort & Spa
Mission Bay, 1.3 km from Mission Bay
United States
Sandra
RM841
RM1,180 total
includes taxes & fees
4 Oct - 5 Oct
Paradise Point Resort & Spa

5. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.2 km from Mission Bay
United States
Rick
RM461
RM530 total
includes taxes & fees
8 Sept - 9 Sept
Comfort Inn Sea World Area

6. San Diego Mission Bay Resort

San Diego Mission Bay Resort
Mission Bay, 1.5 km from Mission Bay
United States
Maria
RM804
RM1,138 total
includes taxes & fees
8 Sept - 9 Sept
San Diego Mission Bay Resort

7. Bahia Resort Hotel

Bahia Resort Hotel
Central Mission Beach, 2 km from Mission Bay
United States
Annmarie
RM708
RM1,038 total
includes taxes & fees
4 Oct - 5 Oct
Bahia Resort Hotel

8. Catamaran Resort and Spa

Catamaran Resort and Spa
Mission Beach, 2.9 km from Mission Bay
United States
Ashley
RM1,004
RM1,369 total
includes taxes & fees
7 Sept - 8 Sept
Catamaran Resort and Spa

9. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
Mission Bay, 1.9 km from Mission Bay
United States
Jerri
RM683
RM999 total
includes taxes & fees
7 Sept - 8 Sept
Hyatt Regency Mission Bay Spa and Marina

10. Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 km from Mission Bay
United States
Guadalupe Pina
RM423
RM487 total
includes taxes & fees
1 Oct - 2 Oct
Best Western San Diego Pacific Beach/Mission Bay

11. Surfer Beach Hotel

Surfer Beach Hotel
Pacific Beach, 3 km from Mission Bay
United States
Lisa
RM680
RM768 total
includes taxes & fees
27 Sept - 28 Sept
Surfer Beach Hotel

12. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
Pacific Beach, 3 km from Mission Bay
United States
Alexis
RM455
RM523 total
includes taxes & fees
8 Sept - 9 Sept
GreenTree Inn San Diego Mission Bay

13. ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
Pacific Beach, 3.2 km from Mission Bay
United States
angelea
RM323
RM364 total
includes taxes & fees
5 Oct - 6 Oct
ITH Beach Bungalow Surf Hostel

14. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
2.8 km from Mission Bay
United States
Nayla
RM366
RM420 total
includes taxes & fees
13 Sept - 14 Sept
Wyndham Garden San Diego Near SeaWorld

15. Heritage Inn San Diego

Heritage Inn San Diego
2.5 km from Mission Bay
United States
Kyle
RM255
RM293 total
includes taxes & fees
13 Sept - 14 Sept
Heritage Inn San Diego

16. E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
Old Town San Diego, 3.1 km from Mission Bay
United States
Carlos
RM252
RM289 total
includes taxes & fees
7 Sept - 8 Sept
E-Z 8 Motel Old Town

17. < 2 Mi to Pacific Beach! Sunny San Diego Escape

< 2 Mi to Pacific Beach! Sunny San Diego Escape
Pacific Beach, 1.5 km from Mission Bay
United States
Thomas
RM1,500
RM3,224 total
includes taxes & fees
7 Sept - 8 Sept
< 2 Mi to Pacific Beach! Sunny San Diego Escape

18. Mission Bay Motel

Mission Bay Motel
Pacific Beach, 3 km from Mission Bay
United States
Qiana
RM357
RM402 total
includes taxes & fees
4 Oct - 5 Oct
Mission Bay Motel

19. Pacific Terrace Hotel

Pacific Terrace Hotel
North Pacific Beach, 3.8 km from Mission Bay
United States
Oleg
RM1,361
RM1,564 total
includes taxes & fees
16 Sept - 17 Sept
Pacific Terrace Hotel

20. Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
Ocean Beach, 4.2 km from Mission Bay
United States
linda
RM255
RM288 total
includes taxes & fees
21 Sept - 22 Sept
Samesun Ocean Beach - Hostel
View all properties

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
View from room
The Wayfarer San Diego
9.4
Exceptional
1,865 reviews
View
View from room
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
9.2
Wonderful
1,292 reviews
View
Pool
Holiday Inn Express San Diego - SeaWorld Area by IHG
9.0
Wonderful
1,002 reviews
View
Outdoor pool
Paradise Point Resort & Spa
8.8
Excellent
2,866 reviews
View
Lobby
Comfort Inn Sea World Area
8.6
Excellent
4,079 reviews
View

Top Mission Bay Hotel Reviews

Comfort Inn Sea World Area

Comfort Inn Sea World Area

10/10 Excellent
"I loved my stay, the front desk was amazing they even gave us a warning that on some days that the breakfast can get super busy and really full of other guests they even help me expand my stay when I accidentally shorten my booking. I will stay with them again."
Angelina 4-night trip
Posted 2 hours ago
Comfort Inn Sea World Area
San Diego Mission Bay Resort

San Diego Mission Bay Resort

10/10 Excellent
"Wonderful place"
Angela 5-night trip
Posted 4 hours ago
San Diego Mission Bay Resort
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

10/10 Excellent
"The room was very clean. Amenities were excellent, the pool was clean and at the right temperature! The breakfast was delicious, 24/7 coffees and teas, hot chocolate & water was great!"
Carol 2-night trip
Posted 5 hours ago
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
Bahia Resort Hotel

Bahia Resort Hotel

10/10 Excellent
"Love this place! Felt like we were in a tropical place! Very clean and super helpful staff!"
Romina 6-night trip
Posted 11 hours ago
Bahia Resort Hotel
The Dana on Mission Bay

The Dana on Mission Bay

10/10 Excellent
"Great stay with beautiful grounds. Amazing view from the room. Would recommend and will definitely stay there again!"
Nataliia 1-night trip
Posted 20 hours ago
The Dana on Mission Bay
The Alcala Hotel Mission Valley/Seaworld

The Alcala Hotel Mission Valley/Seaworld

10/10 Excellent
"Easy to get to fishing charter. Room were clean staff was friendly"
Victor 1-night trip
Posted 23 hours ago
The Alcala Hotel Mission Valley/Seaworld
Surfer Beach Hotel

Surfer Beach Hotel

10/10 Excellent
"Perfect location, friendly staff, and walkable to so many restaurants and shopping."
Lisa 4-night trip
Posted 1 day ago
Surfer Beach Hotel
Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG

10/10 Excellent
"It was one of the best hotel we stayed quickly in San Diego. I do recommend."
Mauro 2-night trip
Posted 2 days ago
Holiday Inn Express San Diego - SeaWorld Area by IHG

Other attractions near Mission Bay

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
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beach near Mission Bay

Why not spend a lazy afternoon at beach near Mission Bay during your trip to San Diego?
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beach near Mission Bay Park

Why not spend a lazy afternoon at beach near Mission Bay Park during your trip to San Diego?
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Crown Point Shores

Why not spend a lazy afternoon at Crown Point Shores during your trip to San Diego? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.
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North Cove Beach

Why not spend a lazy afternoon at North Cove Beach during your trip to San Diego?
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The Dana On Mission Bay, BW Premier Collection

After visiting The Dana On Mission Bay, BW Premier Collection, make a plan to see the other sights and activities in San Diego.
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Bahia Point Beach

Why not spend a lazy afternoon at Bahia Point Beach during your trip to San Diego?
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Marina Village Conference Center

Learn about the events happening in Marina Village Conference Center during your trip to San Diego.
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Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 43 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 43 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, SOMA - San Diego and NTC Promenade.