What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include San Diego Mission Bay Resort and The Dana on Mission Bay .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and Marina Village Conference Center are also worth a stop.

Top 10 Mission Bay Hotels of 2026

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

1. San Diego Mission Bay Resort

Mission Bay

Angela

RM1,521 total

includes taxes & fees

30 Sept - 1 Oct

A pool area with a hot tub, lounge chairs, and umbrellas.

2. The Dana on Mission Bay

Mission Bay

elizabeth

RM869 total

includes taxes & fees

28 Sept - 29 Sept

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

3. Paradise Point Resort & Spa

Mission Bay

Raffi

RM1,222 total

includes taxes & fees

4 Oct - 5 Oct

A resort pool with a lazy river, palm trees, and a view of the ocean.

4. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Linda

RM1,146 total

includes taxes & fees

30 Sept - 1 Oct

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

5. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.3 km from Mission Bay

nishant

RM711 total

includes taxes & fees

21 Sept - 22 Sept

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

6. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Nayla

RM449 total

includes taxes & fees

20 Sept - 21 Sept

A modern building with multiple windows, outdoor seating, and a chessboard.

7. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

2.8 km from Mission Bay

Joshua

RM648 total

includes taxes & fees

20 Sept - 21 Sept

A hotel with a central courtyard, palm trees, and a fountain.

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.1 km from Mission Bay

Edward Palacios

RM612 total

includes taxes & fees

28 Sept - 29 Sept

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

9. Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

David

RM879 total

includes taxes & fees

28 Sept - 29 Sept

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

10. Old Town Inn

3.5 km from Mission Bay

Layne

RM697 total

includes taxes & fees

20 Sept - 21 Sept

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

11. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 4.1 km from Mission Bay

David

RM672 total

includes taxes & fees

27 Sept - 28 Sept

12. Comfort Inn Sea World Area

2.9 km from Mission Bay

Rick

RM539 total

includes taxes & fees

21 Sept - 22 Sept

An outdoor seating area with a fire feature, surrounded by palm trees and modern buildings.

13. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

4.2 km from Mission Bay

Demetrius

RM722 total

includes taxes & fees

20 Sept - 21 Sept

A living room with a large window, a flat-screen TV, and a patterned rug.

14. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Moises

RM527 total

includes taxes & fees

20 Sept - 21 Sept

A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

15. Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

Faleoalii Iereneo

RM674 total

includes taxes & fees

23 Sept - 24 Sept

A hotel entrance with a covered outdoor area, palm trees, and a white building with multiple windows and balconies.

16. Courtyard by Marriott Old Town

Old Town San Diego, 3.9 km from Mission Bay

Paola

RM712 total

includes taxes & fees

28 Sept - 29 Sept

A hotel breakfast area with a long counter displaying various food items, including fruits, pastries, and a coffee station.

17. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

3.6 km from Mission Bay

Philomena

RM618 total

includes taxes & fees

1 Oct - 2 Oct

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

18. Homewood Suites by Hilton San Diego Airport/Liberty Station

5.3 km from Mission Bay

Orlyn

RM955 total

includes taxes & fees

28 Sept - 29 Sept

An outdoor lounge area with seating, a fire feature, and a pool in the background.

19. Town and Country San Diego

5.2 km from Mission Bay

Sol

RM1,131 total

includes taxes & fees

18 Sept - 19 Sept

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

20. Sheraton San Diego Resort

6 km from Mission Bay

Rosemarie

RM997 total

includes taxes & fees

27 Sept - 28 Sept

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A pier at sunset with people sitting and standing, waves crashing below.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

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A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

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Top Mission Bay Hotel Reviews

Best Western Seven Seas

8/10 Good

"A great quick place to catch some sleep"

Marriott Marquis San Diego Marina

10/10 Excellent

"From check-in to check-out—and everything in between—our stay was absolutely picture-perfect! The entire staff represented hospitality in every sense of the word. From the warm welcome to the exceptional service throughout our stay, we truly felt valued as guests. At one point, I accidentally left my phone in another part of the hotel. After a quick walk to the front desk, I was relieved to find that someone had already turned it in and it was safely waiting for me. That experience alone speaks volumes about the staff, the guests, and the atmosphere this hotel creates. Honestly, five stars just doesn’t seem high enough to express how wonderful our experience was. ⭐️⭐️⭐️⭐️⭐️ Thank you to the entire team for making our stay so memorable. We will definitely be returning in the future!"

Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

2. The Dana on Mission Bay

3. Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

5. Holiday Inn Express San Diego - SeaWorld Area by IHG

6. Wyndham Garden San Diego Near SeaWorld

7. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

9. Hampton Inn & Suites San Diego Airport Liberty Station

10. Old Town Inn

11. Fairfield Inn & Suites San Diego Old Town

12. Comfort Inn Sea World Area

13. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

14. GreenTree Inn San Diego Mission Bay

15. Holiday Inn Express San Diego Airport - Old Town by IHG

16. Courtyard by Marriott Old Town

17. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

18. Homewood Suites by Hilton San Diego Airport/Liberty Station

19. Town and Country San Diego

20. Sheraton San Diego Resort

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Gaslamp Quarter

Mission Beach

Ocean Beach

Top Mission Bay Hotel Reviews

Best Western Seven Seas

Frequently asked questions