Best Boutique Hotels in El Nido

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on El Nido Boutique Hotels

No exact matches found, but these alternatives could be just right

Recommended hotels in El Nido

Exterior detail
Charlie's El Nido

Charlie's El Nido

Charlie's El Nido
3.5 star property
El Nido
9.2 out of 10, Wonderful, (89)
"Great room poolside, attentive staff and good food. Wish I'd stayed longer than 1 night!"
United Kingdom
Grace
Charlie's El Nido
Outdoor pool
Seda Lio

Seda Lio

Seda Lio
5.0 star property
El Nido
9.0 out of 10, Wonderful, (305)
"Staff was very attentive to our needs. "
United States
DEO
The price is RM1,236
RM1,427 total
includes taxes & fees
18 Jan - 19 Jan 2026
Seda Lio
Lounge
Glamping at Karuna El Nido

Glamping at Karuna El Nido

Glamping at Karuna El Nido
4.5 star property
El Nido
9.4 out of 10, Exceptional, (97)
"Very comfortable and the staff was exceptional "
United States
Timothy
Glamping at Karuna El Nido
Desk, free WiFi, bed sheets
Morning Walsh Resort El Nido

Morning Walsh Resort El Nido

Morning Walsh Resort El Nido
2.5 star property
El Nido
The price is RM181
RM221 total
includes taxes & fees
2 Jan - 3 Jan 2026
Morning Walsh Resort El Nido
Outdoor pool
Dolarog Beach Resort

Dolarog Beach Resort

Dolarog Beach Resort
3.0 star property
El Nido
7.8 out of 10, Good, (60)
"Location and beach are great"
Germany
Anonymous traveller
The price is RM372
RM416 total
includes taxes & fees
9 Jan - 10 Jan 2026
Dolarog Beach Resort
Outdoor pool
Happiness Boutique Resort El Nido

Happiness Boutique Resort El Nido

Happiness Boutique Resort El Nido
3.0 star property
El Nido
9.6 out of 10, Exceptional, (4)
"Amazing staff and place. Enjoyed every moment of it. "
United States
Elizabeth
The price is RM301
RM367 total
includes taxes & fees
12 Jan - 13 Jan 2026
Happiness Boutique Resort El Nido
In-room safe, desk, free WiFi, bed sheets
El Nido Beach Hotel

El Nido Beach Hotel

El Nido Beach Hotel
3.0 star property
El Nido
7.2 out of 10, Good, (465)
"If you are not picky and you would want to be near restaurants and the main beach, then this would be fine. "
United States
Shiela Banalnal
The price is RM354
RM431 total
includes taxes & fees
19 Dec - 20 Dec
El Nido Beach Hotel
Reception
Lime Resort El Nido

Lime Resort El Nido

Lime Resort El Nido
3.0 star property
El Nido
8.0 out of 10, Very good, (234)
"Everything was beyond my expectations during our stay. Highly recommended."
Canada
Shella
The price is RM448
RM502 total
includes taxes & fees
19 Dec - 20 Dec
Lime Resort El Nido
Breakfast served, local and international cuisine, al fresco dining
Lagùn Hotel

Lagùn Hotel

Lagùn Hotel
3.5 star property
El Nido
8.6 out of 10, Excellent, (363)
"The room was very clean. The staff was helpful in fixing a problem with the room safe. There was a free buffet breakfast as part of our reservation, which included bread, rice, eggs, cereal and juices. The hotel is about a 9 minute walk from the beach (slight incline walking back to the hotel). Small pool and bar on top of hotel. We stayed four nights and would recommend staying that length of time."
United States
Ted G
The price is RM497
RM556 total
includes taxes & fees
13 Jan - 14 Jan 2026
Lagùn Hotel
On the beach
El Nido Mahogany Beach

El Nido Mahogany Beach

El Nido Mahogany Beach
3.0 star property
El Nido
9.4 out of 10, Exceptional, (188)
"Great stay"
United Kingdom
Adrieanne
The price is RM476
RM594 total
includes taxes & fees
20 Dec - 21 Dec
El Nido Mahogany Beach
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top El Nido Hotel Reviews

Frequently asked questions

What's the best boutique-style accommodation in El Nido?
Miniloc Island Resort is a favourite hotel with our travellers looking for stylish accommodation, and features 50 guestrooms, a private beach and spa services.
What's there to see and do in El Nido?
The beaches, island views and snorkelling are just some of the things to enjoy while you're in the area. Activities and attractions to experience around El Nido include El Nido Main Beach, Bacuit Bay and Caalan Beach. While you're here, you might also want to consider exploring Corong Corong Beach, Seven Commando Beach and Marimegmeg Beach.
What kind of weather should I plan for when I travel to El Nido?
Getting an idea of what to expect from the weather in El Nido is important when planning your trip. The hottest months are usually May and June, with an average temperature of 28°C, while the coldest months are February and January, with an average of 27°C. The rainiest months in El Nido are July, September, June and October, with each month seeing an average of 371 mm of rainfall.
What's the best way to get to my boutique hotel in El Nido?
You have a few options for getting to El Nido. The closest major airport is El Nido (ENI), which is located 2.3 mi (3.7 km) from the heart of the city. If you'd like to explore around the area, consider renting a car to explore more sights.

Explore a world of travel with Expedia