Independent San Juan Island hotels

Start date: Check-in selected.
To Date
End date: Check-out

    Change your mind

    Book hotels with free cancellation

    Treat yourself

    Sign in to save 10% or more on thousands of hotels

    Be picky

    Search almost a million properties worldwide

Check prices for these dates

Top San Juan Island Independent Hotels

Anacortes Inn
2.0 star property
8.8 out of 10, Excellent, (394)
"Friendly front desk!"
The price is RM419
RM473 total
includes taxes & fees
2 Nov - 3 Nov
Anacortes Inn
Coachman Inn & Suites
2.5 star property
9.0 out of 10, Wonderful, (1014)
"Well-kept hotel, amazing staff, perfect room, delicious breakfast, overall made our trip awesome."
The price is RM550
RM611 total
includes taxes & fees
17 Oct - 18 Oct
Coachman Inn & Suites
Friday Harbor Suites
2.5 star property
8.4 out of 10, Very good, (1019)
"Great place to stay. "
The price is RM824
RM912 total
includes taxes & fees
17 Oct - 18 Oct
Friday Harbor Suites
Auld Holland Inn
2.5 star property
8.2 out of 10, Very good, (1009)
"Really enjoy this property and the cute little cabins. "
The price is RM414
RM460 total
includes taxes & fees
19 Oct - 20 Oct
Auld Holland Inn
Anacortes Ship Harbor Inn
3.0 star property
9.0 out of 10, Wonderful, (1019)
"Beautiful views and a great place to stay!"
The price is RM377
RM418 total
includes taxes & fees
2 Nov - 3 Nov
Anacortes Ship Harbor Inn
The Marina Inn
2.5 star property
9.4 out of 10, Exceptional, (1018)
"We enjoyed our stay"
The price is RM444
RM501 total
includes taxes & fees
2 Nov - 3 Nov
The Marina Inn
The Orca Inn
2.0 star property
7.8 out of 10, Good, (1012)
"Great stay"
The price is RM482
RM533 total
includes taxes & fees
18 Oct - 19 Oct
The Orca Inn
Anaco Bay Inn
2.0 star property
8.0 out of 10, Very good, (1012)
"Great location"
The price is RM419
RM464 total
includes taxes & fees
21 Oct - 22 Oct
Anaco Bay Inn
Acorn Motor Inn
2.5 star property
8.0 out of 10, Very good, (639)
"Nice and quiet and cheap "
The price is RM334
RM371 total
includes taxes & fees
1 Nov - 2 Nov
Acorn Motor Inn
Sunrise Inn Villas and Suites
2.5 star property
8.6 out of 10, Excellent, (666)
"we love staying at the Inn, the rooms are spacious, comfortable.i enjoy walking by the water and the great restaurant options"
Sunrise Inn Villas and Suites
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Island Hotel Reviews

Explore a world of travel with Expedia