Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,448 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is RM784
RM1,110 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,608 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is RM735
RM1,053 total
includes taxes & fees
5 Apr - 6 Apr
Hyatt Regency Mission Bay Spa and Marina

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,360 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is RM944
RM1,293 total
includes taxes & fees
8 Mar - 9 Mar
San Diego Mission Bay Resort

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,148 reviews)
"Great location and grounds!"
United States
Ethan
The price is RM667
RM858 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4 km from Mission Bay
8.0 out of 10, Very good, (1,014 reviews)
"Great stay"
United States
Viviann
The price is RM399
RM461 total
includes taxes & fees
8 Mar - 9 Mar
Crowne Plaza San Diego - Mission Valley by IHG

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,363 reviews)
"Love this hotel will always stay here when I come to San Diego "
United States
Darlene
The price is RM494
RM741 total
includes taxes & fees
1 Apr - 2 Apr
Sheraton San Diego Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (1,913 reviews)
"Amazing place "
United States
Richard
The price is RM660
RM979 total
includes taxes & fees
5 Apr - 6 Apr
Bahia Resort Hotel

La Jolla Shores Hotel

La Jolla Shores Hotel
3.0 star property
9.3 km from Mission Bay
8.8 out of 10, Excellent, (1,372 reviews)
"Beachfront location was perfect and staff was great."
United States
Jack
The price is RM814
RM1,163 total
includes taxes & fees
23 Mar - 24 Mar
La Jolla Shores Hotel

Ash&9th

Ash&9th
2.0 star property
8.8 km from Mission Bay
8.2 out of 10, Very good, (393 reviews)
"Great location… stuff was really friendly "
United States
Aurora
The price is RM309
RM352 total
includes taxes & fees
7 Apr - 8 Apr
Ash&9th

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6,076 reviews)
"Great place to stay"
United States
David
The price is RM601
RM834 total
includes taxes & fees
11 Mar - 12 Mar
Wyndham San Diego Bayside

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.4 out of 10, Good, (1,309 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is RM245
RM281 total
includes taxes & fees
30 Mar - 31 Mar
Heritage Inn San Diego

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
La Playa, 6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,459 reviews)
"We had great time and enjoyed our stay "
United States
sadra
The price is RM551
RM633 total
includes taxes & fees
8 Mar - 9 Mar
Bay Club Hotel & Marina

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,188 reviews)
"Good location friendly staff"
United States
Anya
The price is RM391
RM449 total
includes taxes & fees
8 Mar - 9 Mar
Wyndham Garden San Diego Near SeaWorld

Pacific View Inn

Pacific View Inn
2.0 star property
North Pacific Beach, 4 km from Mission Bay
8.0 out of 10, Very good, (1,010 reviews)
"The room was wonderful and the staff was exceptional. We had such a great experience staying here."
United States
Tricia
The price is RM723
RM817 total
includes taxes & fees
12 Mar - 13 Mar
Pacific View Inn

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (3,446 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is RM409
RM470 total
includes taxes & fees
10 Mar - 11 Mar
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,964 reviews)
"Great stay"
United States
Lizeth
The price is RM381
RM438 total
includes taxes & fees
10 Mar - 11 Mar
GreenTree Inn San Diego Mission Bay

California Suites Hotel

California Suites Hotel
2.0 star property
7.8 km from Mission Bay
7.8 out of 10, Good, (2,370 reviews)
"Excellent service, clean rooms, and great coffee. "
United States
Joe
California Suites Hotel

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,353 reviews)
"Great location, great price, nice hotel "
United States
Estela
The price is RM531
RM611 total
includes taxes & fees
15 Mar - 16 Mar
Hilton Garden Inn San Diego Old Town/SeaWorld Area

Brisa Pacific Hotel Encinitas

Brisa Pacific Hotel Encinitas
2.0 star property
32 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"Great location and staff is very nice. "
United States
Christina
Brisa Pacific Hotel Encinitas

Courtyard by Marriott San Diego Downtown Little Italy

Courtyard by Marriott San Diego Downtown Little Italy
4.0 star property
Little Italy, 8.1 km from Mission Bay
9.0 out of 10, Wonderful, (414 reviews)
"Great place to stay "
United States
Jacorey
The price is RM549
RM636 total
includes taxes & fees
5 Apr - 6 Apr
Courtyard by Marriott San Diego Downtown Little Italy
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach, North Cove Beach and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.