What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.

Top 10 Mission Bay Hotels of 2026

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

A pool area with a hot tub, lounge chairs, and umbrellas.

1. The Dana on Mission Bay

Mission Bay

Assy Prune Celia

RM956 total

includes taxes & fees

4 Nov - 5 Nov

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

2. San Diego Mission Bay Resort

Mission Bay

Mary

RM1,101 total

includes taxes & fees

29 Nov - 30 Nov

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

3. Paradise Point Resort & Spa

Mission Bay

victor

RM1,189 total

includes taxes & fees

30 Oct - 31 Oct

A resort pool with a lazy river, palm trees, and a view of the ocean.

4. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Megan

RM1,144 total

includes taxes & fees

18 Nov - 19 Nov

A modern dining area with wooden tables and chairs, a central bar area, and a view of the city through large windows.

5. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

North Pacific Beach, 3.5 km from Mission Bay

Amber

RM508 total

includes taxes & fees

1 Nov - 2 Nov

A hotel room with a large bed, a TV, a desk with a lamp, and a bookshelf.

6. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

3.6 km from Mission Bay

Antonia

RM599 total

includes taxes & fees

15 Nov - 16 Nov

A modern hotel with a courtyard featuring outdoor seating, a chess table, and a well-maintained lawn.

7. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

2.8 km from Mission Bay

Evelin

RM673 total

includes taxes & fees

4 Nov - 5 Nov

A hotel with a central courtyard, palm trees, and a fountain.

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.1 km from Mission Bay

Sheri

RM673 total

includes taxes & fees

25 Nov - 26 Nov

An outdoor seating area with fire pits, lounge chairs, and a modern building in the background.

9. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

4.2 km from Mission Bay

Edith

RM793 total

includes taxes & fees

15 Nov - 16 Nov

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

10. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.3 km from Mission Bay

Kenneth

RM597 total

includes taxes & fees

9 Nov - 10 Nov

An outdoor lounge area with seating, a fire feature, and a view of the building's interior.

11. Hampton Inn San Diego/Mission Valley

4.3 km from Mission Bay

Blake Douglas

RM633 total

includes taxes & fees

8 Nov - 9 Nov

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

12. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 4.1 km from Mission Bay

Daniel

RM573 total

includes taxes & fees

15 Nov - 16 Nov

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

13. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Sarah

RM449 total

includes taxes & fees

15 Nov - 16 Nov

A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

14. Comfort Inn San Diego Old Town

Old Town San Diego, 4 km from Mission Bay

Ernesto

RM514 total

includes taxes & fees

29 Nov - 30 Nov

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

15. Homewood Suites by Hilton San Diego Airport/Liberty Station

5.3 km from Mission Bay

Alicia

RM857 total

includes taxes & fees

15 Nov - 16 Nov

A living room with a large window, a flat-screen TV, and a patterned rug.

16. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Arman

RM528 total

includes taxes & fees

2 Nov - 3 Nov

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

17. Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

MANUEL

RM688 total

includes taxes & fees

22 Nov - 23 Nov

A pool area with lounge chairs and palm trees.

18. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.7 km from Mission Bay

shon

RM671 total

includes taxes & fees

3 Nov - 4 Nov

A hotel lobby with a waterfall feature, outdoor seating area, and multiple floors with balconies.

19. Crowne Plaza San Diego - Mission Valley by IHG

4 km from Mission Bay

Thao

RM536 total

includes taxes & fees

23 Nov - 24 Nov

A hotel entrance with a stone archway, a reception desk, and potted plants.

20. Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

JEFFREY

RM637 total

includes taxes & fees

2 Nov - 3 Nov

View all properties

Compare top hotels in Mission Bay

The Dana on Mission Bay 3.5 star property Mission Bay View	San Diego Mission Bay Resort 4.0 star property Mission Bay View	Paradise Point Resort & Spa 4.0 star property Mission Bay View	Hyatt Regency Mission Bay Spa and Marina 4.0 star property Mission Bay View	La Quinta Inn & Suites by Wyndham San Diego Mission Bay 3.0 star property North Pacific Beach, 3.5 km from Mission Bay View
9.0 Wonderful 4,471 reviews	8.6 Excellent 1,660 reviews	8.8 Excellent 2,958 reviews	8.4 Very good 1,647 reviews	8.0 Very good 1,620 reviews
The price is RM730 RM956 total includes taxes & fees 4 Nov - 5 Nov	The price is RM771 RM1,101 total includes taxes & fees 29 Nov - 30 Nov	The price is RM847 RM1,189 total includes taxes & fees 30 Oct - 31 Oct	The price is RM807 RM1,144 total includes taxes & fees 18 Nov - 19 Nov	The price is RM442 RM508 total includes taxes & fees 1 Nov - 2 Nov
No Breakfast included Yes, Pool No Spa Yes, Pet-friendly No WiFi included Yes, Parking	No Breakfast included Yes, Pool Yes, Spa Yes, Pet-friendly Yes, WiFi included Yes, Parking	No Breakfast included Yes, Pool Yes, Spa Yes, Pet-friendly Yes, WiFi included Yes, Parking	No Breakfast included Yes, Pool Yes, Spa Yes, Pet-friendly Yes, WiFi included Yes, Parking	Yes, Breakfast included Yes, Pool No Spa Yes, Pet-friendly Yes, WiFi included Yes, Parking

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

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A coastal walkway with a statue, benches, and people.

Point Loma

Seaside views a bustling port and top sights from Marine Corps Recruit Depot to Shelter Island – discover Point Loma, a destination also famous for its island views.

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Top Mission Bay Hotel Reviews

Crowne Plaza San Diego - Mission Valley by IHG

10/10 Excellent

"I have stayed at the Crown in San Diego before and it meets and exceeds all my expectations other then there needs to be a full menu for dinner. Staff was great and had a really great time. Location was perfect for visiting my family."

Wyndham San Diego Bayside

10/10 Excellent

"Nice clean room, central located to walking activities. It's nice to have a view of the bay but not nice to look onto the dirty roof tops of the buildings in front of us. That I do not know if they can do anything about. On a nicer note we spoke with a lovely lady about different eating places we could walk to, she even gave up a coupon to eat at a few that were in front of the hotel, down the water front."

Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

2. San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

5. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

6. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

7. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

9. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

10. Holiday Inn Express San Diego - SeaWorld Area by IHG

11. Hampton Inn San Diego/Mission Valley

12. Fairfield Inn & Suites San Diego Old Town

13. Wyndham Garden San Diego Near SeaWorld

14. Comfort Inn San Diego Old Town

15. Homewood Suites by Hilton San Diego Airport/Liberty Station

16. GreenTree Inn San Diego Mission Bay

17. Hampton Inn & Suites San Diego Airport Liberty Station

18. Best Western Plus Hacienda Hotel Old Town

19. Crowne Plaza San Diego - Mission Valley by IHG

20. Holiday Inn Express San Diego Airport - Old Town by IHG

Compare top hotels in Mission Bay

The Dana on Mission Bay

San Diego Mission Bay Resort

Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

La Quinta Inn & Suites by Wyndham San Diego Mission Bay

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Gaslamp Quarter

Mission Beach

Point Loma

Top Mission Bay Hotel Reviews

Crowne Plaza San Diego - Mission Valley by IHG

Frequently asked questions